Package: HumanAffyData 1.39.0

Brad Nelms

HumanAffyData: GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

Authors:Brad Nelms

HumanAffyData_1.39.0.tar.gz
HumanAffyData_1.39.0.tar.gz(r-4.7-any)HumanAffyData_1.39.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HumanAffyData/json (API)

# Install 'HumanAffyData' in R:

install.packages('HumanAffyData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:HumanAffyData-1.39.0(data/experiment 3.24)HumanAffyData-1.38.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata geo arrayexpress homo_sapiens_data microarraydata expressiondata datapkg

3.30 score 0 exports 57 dependencies

Last updated from:8c81c82a4e. Checks:1 ERROR, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	133
linux-devel	OK	267
source / vignettes	OK	227
linux-release	OK	201

Exports:

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Intro to the HumanAffyData package

1 Introduction | 2 Dataset overview | 3 Citation

Rendered fromHumanAffyData.Rnwusingutils::Sweave

Last update: 2016-08-18
Started: 2016-08-18

Help page	Topics
GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects	HumanAffyData-package HumanAffyData

Package: HumanAffyData 1.39.0

HumanAffyData: GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)