Package: HuBMAPR 1.1.0

Christine Hou

HuBMAPR: Interface to 'HuBMAP'

'HuBMAP' provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `files_globus_url()`.

Authors:Christine Hou [aut, cre], Martin Morgan [aut], Federico Marini [aut]

HuBMAPR_1.1.0.tar.gz
HuBMAPR_1.1.0.zip(r-4.5)HuBMAPR_1.1.0.zip(r-4.4)
HuBMAPR_1.1.0.tgz(r-4.4-any)
HuBMAPR_1.1.0.tar.gz(r-4.5-noble)HuBMAPR_1.1.0.tar.gz(r-4.4-noble)
HuBMAPR_1.1.0.tgz(r-4.4-emscripten)
HuBMAPR.pdf |HuBMAPR.html
HuBMAPR/json (API)
NEWS

# Install 'HuBMAPR' in R:
install.packages('HuBMAPR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/christinehou11/hubmapr/issues

On BioConductor:HuBMAPR-0.99.6(bioc 3.20)

softwaresinglecelldataimportthirdpartyclientspatialinfrastructure

5.30 score 2 stars 1 scripts 30 exports 29 dependencies

Last updated 2 days agofrom:d16cb8f0ac. Checks:OK: 1 ERROR: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winERROROct 30 2024
R-4.5-linuxERROROct 30 2024
R-4.4-winERROROct 30 2024
R-4.4-macERROROct 30 2024

Exports:bulk_data_transfercollection_contactscollection_contributorscollection_datacollection_informationcollectionscollections_default_columnsdataset_contributorsdataset_deriveddataset_detaildataset_metadatadatasetsdatasets_default_columnsdonor_deriveddonor_detaildonor_metadatadonorsdonors_default_columnsorganpublication_authorspublication_datapublication_informationpublicationspublications_default_columnssample_derivedsample_detailsample_metadatasamplessamples_default_columnsuuid_provenance

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttr2lifecyclemagrittropensslpillarpkgconfigpurrrR6rappdirsrjsonconsrlangstringistringrsystibbletidyrtidyselectutf8vctrswhiskerwithr

Explore Human BioMolecular Atlas Program Data Portal

Rendered fromhubmapr_vignettes.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-10-13
Started: 2024-08-02

Readme and manuals

Help Manual

Help pageTopics
HuBMAP File Queryingbulk_data_transfer
Collection Information Summaries from Collection UUIDcollection_information print.collection_information
HuBMAP Collectionscollections collections_default_columns collection_contacts collection_contributors collection_data
HuBMAP Datasetsdatasets datasets_default_columns dataset_contributors dataset_derived dataset_detail dataset_metadata
HuBMAP Donorsdonors donors_default_columns donor_derived donor_detail donor_metadata
HuBMAP Organsorgan
Publication Information Summaries from Publication UUIDprint.publication_information publication_information
HuBMAP Samplespublications publications_default_columns publication_authors publication_data
HuBMAP Samplessamples samples_default_columns sample_derived sample_detail sample_metadata
HuBMAP Provenanceuuid_provenance