Package: HuBMAPR 1.1.4
Christine Hou
HuBMAPR: Interface to 'HuBMAP'
'HuBMAP' provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.
Authors:
HuBMAPR_1.1.4.tar.gz
HuBMAPR_1.1.4.zip(r-4.5)HuBMAPR_1.1.4.zip(r-4.4)
HuBMAPR_1.1.4.tgz(r-4.4-any)
HuBMAPR_1.1.4.tar.gz(r-4.5-noble)HuBMAPR_1.1.4.tar.gz(r-4.4-noble)
HuBMAPR_1.1.4.tgz(r-4.4-emscripten)
HuBMAPR.pdf |HuBMAPR.html✨
HuBMAPR/json (API)
NEWS
| # Install 'HuBMAPR' in R: |
| install.packages('HuBMAPR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/christinehou11/hubmapr/issues
Pkgdown:https://christinehou11.github.io
On BioConductor:HuBMAPR-1.1.4(bioc 3.21)HuBMAPR-1.0.4(bioc 3.20)
softwaresinglecelldataimportthirdpartyclientspatialinfrastructurebioconductor-packageclienthubmaprstudio
Last updated 2 months agofrom:33fd90f80f. Checks:ERROR: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Dec 03 2024 |
| R-4.5-win | ERROR | Dec 03 2024 |
| R-4.5-linux | ERROR | Dec 03 2024 |
| R-4.4-win | ERROR | Dec 03 2024 |
| R-4.4-mac | ERROR | Dec 03 2024 |
Exports:bulk_data_transfercollection_contactscollection_contributorscollection_datacollection_informationcollectionscollections_default_columnsdataset_contributorsdataset_deriveddataset_detaildataset_metadatadatasetsdatasets_default_columnsdonor_deriveddonor_detaildonor_metadatadonorsdonors_default_columnsorganpublication_authorspublication_datapublication_informationpublicationspublications_default_columnssample_derivedsample_detailsample_metadatasamplessamples_default_columnsuuid_provenance
Dependencies:askpassclicpp11curldplyrfansigenericsgluehttr2lifecyclemagrittropensslpillarpkgconfigpurrrR6rappdirsrjsonconsrlangstringistringrsystibbletidyrtidyselectutf8vctrswhiskerwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| HuBMAP File Querying | bulk_data_transfer |
| Collection Information Summaries from Collection UUID | collection_information print.collection_information |
| HuBMAP Collections | collections collections_default_columns collection_contacts collection_contributors collection_data |
| HuBMAP Datasets | datasets datasets_default_columns dataset_contributors dataset_derived dataset_detail dataset_metadata |
| HuBMAP Donors | donors donors_default_columns donor_derived donor_detail donor_metadata |
| HuBMAP Organs | organ |
| Publication Information Summaries from Publication UUID | print.publication_information publication_information |
| HuBMAP Samples | publications publications_default_columns publication_authors publication_data |
| HuBMAP Samples | samples samples_default_columns sample_derived sample_detail sample_metadata |
| HuBMAP Provenance | uuid_provenance |
