Package: HighlyReplicatedRNASeq 1.25.0

Constantin Ahlmann-Eltze

HighlyReplicatedRNASeq: Collection of Bulk RNA-Seq Experiments With Many Replicates

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

Authors:Constantin Ahlmann-Eltze [aut, cre]

HighlyReplicatedRNASeq_1.25.0.tar.gz
HighlyReplicatedRNASeq_1.25.0.tar.gz(r-4.7-any)HighlyReplicatedRNASeq_1.25.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HighlyReplicatedRNASeq/json (API)

# Install 'HighlyReplicatedRNASeq' in R:

install.packages('HighlyReplicatedRNASeq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/const-ae/highlyreplicatedrnaseq/issues

On BioConductor:HighlyReplicatedRNASeq-1.25.0(data/experiment 3.24)HighlyReplicatedRNASeq-1.24.0(data/experiment 3.23)

experimenthub experimentdata expressiondata sequencingdata rnaseqdata datapkg

4.30 score 2 stars 1 scripts 2 exports 67 dependencies

Last updated from:3999d3f7b6. Checks:3 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	149
linux-devel	NOTE	372
source / vignettes	OK	275
linux-release	NOTE	321

Exports:Schurch16 Schurch16_metadata

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Arrays S4Vectors Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

HighlyReplicatedRNASeq

Load Data | Explore Data | Reference | Session Info

Rendered fromHighlyReplicatedRNASeq.Rmdusingknitr::rmarkdown

Last update: 2020-04-03
Started: 2020-04-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
HighlyReplicatedRNASeq: Collection of Bulk RNA-Seq Experiments With Many Replicates	HighlyReplicatedRNASeq
Get the RNA-seq counts from Schurch et al. (2016)	Schurch16 Schurch16_metadata