Package: HiCBricks 1.31.3

Introduction | Create Brick objects to store Hi-C data | Creating a Brick object from a text file 2D contact matrix | Creating Brick objects from sparse matrices | Creating Brick objects from .mcool binary files | Creating Brick objects from .hic binary files | Exporting data from Brick objects | Converting sparse matrix to mcool | Accessing data in Brick objects | Accessing genomic coordinates in a Brick object | Identifying matrix row/col using ranges operations | Accessing contact matrices in a Brick object | Retrieving points separated by a certain distance | Retrieving subsets of a matrix | Accessing matrix metadata columns | Matrix utility functions | Example analyses implemented in HiCBricks | Call Topologically Associated Domains with Local score differentiator (LSD) | Fetching the TAD calls from the Brick object | Creating sophisticated data visualization plots using HiCBricks | Plotting one sample heatmaps | Plotting bipartite (two-sample) heatmaps | Plotting TADs on Bipartite heatmaps | Making edits to additional plot elements | Modifying text elements in plots