Package: HVP 1.3.0
Wei Xin Chan
HVP: Hierarchical Variance Partitioning
HVP is a quantitative batch effect metric that estimates the proportion of variance associated with batch effects in a data set.
Authors:
HVP_1.3.0.tar.gz
HVP_1.3.0.zip(r-4.7-any)HVP_1.3.0.zip(r-4.6-any)HVP_1.3.0.zip(r-4.5-any)
HVP_1.3.0.tgz(r-4.6-any)HVP_1.3.0.tgz(r-4.5-any)
HVP_1.3.0.tar.gz(r-4.7-any)HVP_1.3.0.tar.gz(r-4.6-any)
HVP_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
HVP/json (API)
| # Install 'HVP' in R: |
| install.packages('HVP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:HVP-1.3.0(bioc 3.24)HVP-1.2.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
singlecelltranscriptomicsgeneexpressionbatcheffect
Last updated from:fc5632ed7e. Checks:8 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 191 | ||
| linux-devel | WARNING | 331 | ||
| source / vignettes | ERROR | 310 | ||
| linux-release | WARNING | 296 | ||
| macos-release | WARNING | 142 | ||
| macos-oldrel | WARNING | 133 | ||
| windows-devel | WARNING | 130 | ||
| windows-release | WARNING | 129 | ||
| windows-oldrel | WARNING | 135 | ||
| wasm-release | OK | 167 |
Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Hierarchical variance partitioning (HVP) | HVP HVP,data.frame-method HVP,Matrix-method HVP,matrix-method HVP,Seurat-method HVP,SummarizedExperiment-method |
| HVP results class | hvp-class |
| Plot results of permutation test | plot,hvp,missing-method |
| Sigmoid function | sigmoid |
| Simulate log-transformed microarray gene expression data | simulateMicroarray |
| Splits subsettable objects according to their columns | splitCols |