Introducing the HCAData package | Installing HCAData | Loading HCAData and the Human Cell Atlas data | Explore data with iSEE | Processing a subset of the HCA bone marrow data | Exploring the dataset with iSEE | Saving the processed object | Session info
Package: HCAData 1.29.0
Federico Marini
HCAData: Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).
Authors:
HCAData_1.29.0.tar.gz
HCAData_1.29.0.tar.gz(r-4.7-any)HCAData_1.29.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HCAData/json (API)
| # Install 'HCAData' in R: |
| install.packages('HCAData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/federicomarini/hcadata/issues
On BioConductor:HCAData-1.29.0(data/experiment 3.24)HCAData-1.28.0(data/experiment 3.23)
rnaseqdatasinglecelldataexperimentdataexpressiondataexperimenthubbioconductordatasethuman-cell-atlasrna-seqsingle-cell-rna-seqdatapkg
Last updated from:b37a62effc. Checks:1 NOTE, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 185 | ||
| linux-devel | OK | 468 | ||
| source / vignettes | OK | 401 | ||
| linux-release | OK | 432 |
Exports:HCAData
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbiocmakeBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydir.expirydplyrExperimentHubfastmapfilelockgenericsGenomicRangesglueh5mreadHDF5Arrayhttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrhdf5rhdf5filtersRhdf5librlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Download data from the HCA via ExperimentHub | HCAData |