Package: Guitar 2.23.0
Guitar: Guitar
The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.
Authors:
Guitar_2.23.0.tar.gz
Guitar_2.23.0.zip(r-4.5)Guitar_2.23.0.zip(r-4.4)Guitar_2.23.0.zip(r-4.3)
Guitar_2.23.0.tgz(r-4.4-any)Guitar_2.23.0.tgz(r-4.3-any)
Guitar_2.23.0.tar.gz(r-4.5-noble)Guitar_2.23.0.tar.gz(r-4.4-noble)
Guitar_2.23.0.tgz(r-4.4-emscripten)Guitar_2.23.0.tgz(r-4.3-emscripten)
Guitar.pdf |Guitar.html✨
Guitar/json (API)
NEWS
# Install 'Guitar' in R: |
install.packages('Guitar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Guitar-2.23.0(bioc 3.21)Guitar-2.22.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencingsplicedalignmentalignmentdataimportrnaseqmethylseqqualitycontroltranscription
Last updated 2 months agofrom:4f9853b777. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 18 2024 |
R-4.5-win | NOTE | Dec 18 2024 |
R-4.5-linux | NOTE | Dec 18 2024 |
R-4.4-win | NOTE | Dec 18 2024 |
R-4.4-mac | NOTE | Dec 18 2024 |
R-4.3-win | NOTE | Dec 18 2024 |
R-4.3-mac | NOTE | Dec 18 2024 |
Exports:GRangesListmapToTranscriptsGuitarPlotmakeGuitarTxdbnormalizesamplePoints
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArraydplyrevaluatefansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraySummarizedExperimentsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
GRangesListmapToTranscripts | GRangesListmapToTranscripts |
GuitarPlot | GuitarPlot |
makeGuitarTxdb | makeGuitarTxdb |
normalize | normalize |
samplePoints | samplePoints |