Package: Guitar 2.29.0
Guitar: Guitar
The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.
Authors:
Guitar_2.29.0.tar.gz
Guitar_2.29.0.zip(r-4.7-any)Guitar_2.29.0.zip(r-4.6-any)Guitar_2.29.0.zip(r-4.5-any)
Guitar_2.29.0.tgz(r-4.6-any)Guitar_2.29.0.tgz(r-4.5-any)
Guitar_2.29.0.tar.gz(r-4.7-any)Guitar_2.29.0.tar.gz(r-4.6-any)
Guitar_2.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Guitar/json (API)
| # Install 'Guitar' in R: |
| install.packages('Guitar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Guitar-2.29.0(bioc 3.24)Guitar-2.28.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencingsplicedalignmentalignmentdataimportrnaseqmethylseqqualitycontroltranscription
Last updated from:5b174abc61. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 187 | ||
| linux-devel | NOTE | 398 | ||
| source / vignettes | OK | 1138 | ||
| linux-release | NOTE | 396 | ||
| macos-release | NOTE | 230 | ||
| macos-oldrel | NOTE | 243 | ||
| windows-devel | NOTE | 321 | ||
| windows-release | NOTE | 290 | ||
| windows-oldrel | NOTE | 274 | ||
| wasm-release | OK | 142 |
Exports:GRangesListmapToTranscriptsGuitarPlotmakeGuitarTxdbnormalizesamplePoints
Dependencies:AnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdplyrevaluatefarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4VectorsS7scalesSeqinfosnowsystibbletidyselectutf8vctrsviridisLitewithrxfunXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GRangesListmapToTranscripts | GRangesListmapToTranscripts |
| GuitarPlot | GuitarPlot |
| makeGuitarTxdb | makeGuitarTxdb |
| normalize | normalize |
| samplePoints | samplePoints |
