Package: Guitar 2.23.0

Jia Meng

Guitar: Guitar

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Authors:Xiao Du, Hui Liu, Lin Zhang, Jia Meng

Guitar_2.23.0.tar.gz
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Guitar.pdf |Guitar.html
Guitar/json (API)
NEWS

# Install 'Guitar' in R:
install.packages('Guitar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:Guitar-2.23.0(bioc 3.21)Guitar-2.22.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingsplicedalignmentalignmentdataimportrnaseqmethylseqqualitycontroltranscription

5.26 score 36 scripts 416 downloads 5 mentions 5 exports 94 dependencies

Last updated 2 months agofrom:4f9853b777. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winNOTEDec 18 2024
R-4.5-linuxNOTEDec 18 2024
R-4.4-winNOTEDec 18 2024
R-4.4-macNOTEDec 18 2024
R-4.3-winNOTEDec 18 2024
R-4.3-macNOTEDec 18 2024

Exports:GRangesListmapToTranscriptsGuitarPlotmakeGuitarTxdbnormalizesamplePoints

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArraydplyrevaluatefansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraySummarizedExperimentsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryamlzlibbioc

Guitar

Rendered fromGuitar-Overview.Rnwusingknitr::knitron Dec 18 2024.

Last update: 2019-04-25
Started: 2015-09-28

Readme and manuals

Help Manual

Help pageTopics
GRangesListmapToTranscriptsGRangesListmapToTranscripts
GuitarPlotGuitarPlot
makeGuitarTxdbmakeGuitarTxdb
normalizenormalize
samplePointssamplePoints