1 Description of the GEUVADIS project | 2 Downloading the GEUVADIS data | 3 Data preprocessing | APPENDIX | A Session information | B References
Package: GeuvadisTranscriptExpr 1.41.1
Malgorzata Nowicka
GeuvadisTranscriptExpr: Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project
Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.
Authors:
GeuvadisTranscriptExpr_1.41.1.tar.gz
GeuvadisTranscriptExpr_1.41.1.tar.gz(r-4.7-any)GeuvadisTranscriptExpr_1.41.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GeuvadisTranscriptExpr/json (API)
| # Install 'GeuvadisTranscriptExpr' in R: |
| install.packages('GeuvadisTranscriptExpr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- counts - Sample data for sQTL analysis
- gene_ranges - Sample data for sQTL analysis
- genotypes - Sample data for sQTL analysis
- snp_ranges - Sample data for sQTL analysis
On BioConductor:GeuvadisTranscriptExpr-1.41.1(data/experiment 3.24)GeuvadisTranscriptExpr-1.40.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
homo_sapiens_datasnpdatagenomernaseqdatasequencingdataexpressiondatadatapkg
Last updated from:04f2bb12a4. Checks:1 WARNING, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 139 | ||
| linux-devel | OK | 208 | ||
| source / vignettes | OK | 278 | ||
| linux-release | OK | 256 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Sample data for sQTL analysis | counts gene_ranges genotypes snp_ranges |