Package: GenomicCoordinates 1.1.0

Jacques Serizay

GenomicCoordinates: Enhanced string parsing for genomic coordinates

Extends string parsing capabilities for genomic coordinates, supporting various formats including comma-separated numbers, space-delimited coordinates, and automatic detection of GRanges, GPos, and GInteractions objects.

Authors:Jacques Serizay [aut, cre]

GenomicCoordinates_1.1.0.tar.gz
GenomicCoordinates_1.1.0.zip(r-4.7)GenomicCoordinates_1.1.0.zip(r-4.6)GenomicCoordinates_1.1.0.zip(r-4.5)
GenomicCoordinates_1.1.0.tgz(r-4.6-any)GenomicCoordinates_1.1.0.tgz(r-4.5-any)
GenomicCoordinates_1.1.0.tar.gz(r-4.7-any)GenomicCoordinates_1.1.0.tar.gz(r-4.6-any)
GenomicCoordinates_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GenomicCoordinates/json (API)

# Install 'GenomicCoordinates' in R:

install.packages('GenomicCoordinates', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/js2264/genomiccoordinates/issues

On BioConductor:GenomicCoordinates-1.1.0(bioc 3.24)GenomicCoordinates-1.0.0(bioc 3.23)

infrastructure datarepresentation genomeannotation

4.60 score 2 stars 4 scripts 252 downloads 6 exports 66 dependencies

Last updated from:0a24b7ecf4. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	169
linux-devel-x86_64	OK	348
source / vignettes	OK	258
linux-release-x86_64	OK	366
macos-release-arm64	OK	204
macos-oldrel-arm64	OK	177
windows-devel	OK	273
windows-release	OK	292
windows-oldrel	OK	297
wasm-release	OK	143

Exports:as_ginteractions as_gpos as_granges as_iranges detect_genomic_class GenomicCoordinates

Dependencies:abind askpass BH Biobase BiocBaseUtils BiocGenerics BiocIO BiocParallel Biostrings bitops cigarillo cli codetools cpp11 crayon curl DelayedArray dplyr formatR futile.logger futile.options generics GenomicAlignments GenomicRanges glue httr InteractionSet IRanges jsonlite lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats mime openssl pillar pkgconfig plyinteractions plyranges R6 Rcpp RCurl restfulr Rhtslib rjson rlang Rsamtools rtracklayer S4Arrays S4Vectors Seqinfo snow SparseArray SummarizedExperiment sys tibble tidyselect utf8 vctrs withr XML XVector yaml

GenomicCoordinates: Enhanced String Parsing for Genomic Coordinates

Jacques Serizay

Rendered fromGenomicCoordinates.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-03-31
Started: 2025-09-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Handle special genomic string formats	.handle_special_formats
Additional helper functions for corner cases	.is_single_position
Convert to GPos object	as_gpos
Conversion methods for genomic coordinates	as_ginteractions,character-method as_gpos,character-method as_granges,character-method as_iranges,character-method coercion
Detect the appropriate class for genomic strings	detect_genomic_class
GenomicCoordinates: Main parsing function	GenomicCoordinates
Re-exported functions from plyranges and plyinteractions	as_ginteractions as_granges as_iranges reexports