Package: GateFinder 1.33.0

Nima Aghaeepour

GateFinder: Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Authors:Nima Aghaeepour <[email protected]>, Erin F. Simonds <[email protected]>

GateFinder_1.33.0.tar.gz
GateFinder_1.33.0.zip(r-4.7)GateFinder_1.33.0.zip(r-4.6)GateFinder_1.33.0.zip(r-4.5)
GateFinder_1.33.0.tgz(r-4.6-any)GateFinder_1.33.0.tgz(r-4.5-any)
GateFinder_1.33.0.tar.gz(r-4.7-any)GateFinder_1.33.0.tar.gz(r-4.6-any)
GateFinder_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GateFinder/json (API)

# Install 'GateFinder' in R:

install.packages('GateFinder', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

marker.names - LPSData
prop.markers - LPSData
rawdata - LPSData

On BioConductor:GateFinder-1.33.0(bioc 3.24)GateFinder-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology flowcytometry cellbiology clustering

3.30 score 7 scripts 3 exports 36 dependencies

Last updated from:c1b9cb8f8a. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	169
linux-devel-x86_64	WARNING	227
source / vignettes	OK	211
linux-release-x86_64	WARNING	230
macos-release-arm64	WARNING	99
macos-oldrel-arm64	WARNING	92
windows-devel	WARNING	123
windows-release	WARNING	141
windows-oldrel	WARNING	117
wasm-release	OK	157

Exports:GateFinder plot plot.GateFinder

Dependencies:BH Biobase BiocGenerics biocmake cpp11 cytolib deldir DEoptimR diptest dir.expiry filelock flowCore flowFP flowViz generics hexbin IDPmisc interp jpeg KernSmooth lattice latticeExtra MASS matrixStats mvoutlier png RColorBrewer Rcpp RcppEigen Rhdf5lib robustbase RProtoBufLib S4Vectors sgeostat sp splancs

GateFinder

Licensing | Introduction | Basic Functionality | Advanced Parameters

Rendered fromGateFinder.Rnwusingutils::Sweave

Last update: 2018-09-17
Started: 2018-04-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
GateFinder	GateFinder-package
GateFinder	GateFinder
Class '"GatingProjection"'	GatingProjection GatingProjection-class plot,GatingProjection,ANY-method plot,matrix,GatingProjection-method
LPSData	LPSData marker.names prop.markers rawdata
plot.GateFinder	plot.GateFinder