Package: GateFinder 1.25.0

Nima Aghaeepour

GateFinder: Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Authors:Nima Aghaeepour <[email protected]>, Erin F. Simonds <[email protected]>

GateFinder_1.25.0.tar.gz
GateFinder_1.25.0.zip(r-4.5)GateFinder_1.25.0.zip(r-4.4)GateFinder_1.25.0.zip(r-4.3)
GateFinder_1.25.0.tgz(r-4.4-any)GateFinder_1.25.0.tgz(r-4.3-any)
GateFinder_1.25.0.tar.gz(r-4.5-noble)GateFinder_1.25.0.tar.gz(r-4.4-noble)
GateFinder_1.25.0.tgz(r-4.4-emscripten)GateFinder_1.25.0.tgz(r-4.3-emscripten)
GateFinder.pdf |GateFinder.html✨
GateFinder/json (API)
NEWS

# Install 'GateFinder' in R:
install.packages('GateFinder', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:GateFinder-1.25.0(bioc 3.20)GateFinder-1.24.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 0.91 score 32 dependencies

Last updated 2 months agofrom:897cf408a0

Exports:GateFinderplotplot.GateFinder

Dependencies:BHBiobaseBiocGenericscpp11cytolibdeldirDEoptimRdiptestflowCoreflowFPflowVizhexbinIDPmiscinterpjpegKernSmoothlatticelatticeExtraMASSmatrixStatsmvoutlierpngRColorBrewerRcppRcppEigenRhdf5librobustbaseRProtoBufLibS4Vectorssgeostatspsplancs

GateFinder

Rendered fromGateFinder.Rnwusingutils::Sweaveon Jun 30 2024.

Last update: 2018-09-17
Started: 2018-04-02

Readme and manuals

Help Manual

Help pageTopics
GateFinderGateFinder-package
GateFinderGateFinder
Class '"GatingProjection"'GatingProjection GatingProjection-class plot,GatingProjection,ANY-method plot,matrix,GatingProjection-method
LPSDataLPSData marker.names prop.markers rawdata
plot.GateFinderplot.GateFinder