Package: GSE103322 1.19.0

Mariano Alvarez

GSE103322: GEO accession data GSE103322 as a SingleCellExperiment

Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.

Authors:Mariano Alvarez [aut, cre]

GSE103322_1.19.0.tar.gz
GSE103322_1.19.0.tar.gz(r-4.7-any)GSE103322_1.19.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GSE103322/json (API)

# Install 'GSE103322' in R:

install.packages('GSE103322', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GSE103322-1.19.0(data/experiment 3.24)GSE103322-1.18.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata genome dnaseqdata rnaseqdata expressiondata homo_sapiens_data cancerdata singlecelldata geo experimenthub datapkg

3.30 score 0 exports 75 dependencies

Last updated from:bc1f79b48f. Checks:1 WARNING, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	164
linux-devel	OK	222
source / vignettes	OK	240
linux-release	OK	234

Exports:

Dependencies:abind askpass Biobase BiocFileCache BiocGenerics bit bit64 blob cachem cli clipr cpp11 crayon curl data.table DBI dbplyr DelayedArray dplyr fastmap filelock generics GenomicRanges GEOquery glue hms httr httr2 IRanges jsonlite lattice lifecycle limma magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig prettyunits progress purrr R.methodsS3 R.oo R.utils R6 readr rentrez rlang RSQLite rvest S4Arrays S4Vectors selectr Seqinfo SparseArray statmod stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tzdb utf8 vctrs vroom withr XML xml2 XVector

scRNASeq HNSC data using Bioconductor's ExperimentHub

Accessing human HNSC scRNASeq data using Bioconductor's ExperimentHub | Exploring the metadata | Extracting the data | sessionInfo()

Rendered fromGSE103322.Rmdusingknitr::rmarkdown

Last update: 2021-05-13
Started: 2021-03-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
GEO accession GSE103322 available as an 'SingleCellExperiment' object.	GSE103322-package GSE103322