Introduction | Prioritization thresholds for SNPs of known interaction effect sizes | Prioritization thresholds for SNPs of unknown interaction effect sizes | Prioritizing SNPs for genetic interactions from scratch
Package: GEWIST 1.57.0
Wei Q. Deng
GEWIST: Gene Environment Wide Interaction Search Threshold
This 'GEWIST' package provides statistical tools to efficiently optimize SNP prioritization for gene-gene and gene-environment interactions.
Authors:
GEWIST_1.57.0.tar.gz
GEWIST_1.57.0.zip(r-4.7)GEWIST_1.57.0.zip(r-4.6)GEWIST_1.57.0.zip(r-4.5)
GEWIST_1.57.0.tgz(r-4.6-any)GEWIST_1.57.0.tgz(r-4.5-any)
GEWIST_1.57.0.tar.gz(r-4.7-any)GEWIST_1.57.0.tar.gz(r-4.6-any)
GEWIST_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GEWIST/json (API)
| # Install 'GEWIST' in R: |
| install.packages('GEWIST', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GEWIST-1.57.0(bioc 3.24)GEWIST-1.56.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:36af34b263. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 168 | ||
| linux-devel-x86_64 | NOTE | 209 | ||
| source / vignettes | OK | 305 | ||
| linux-release-x86_64 | NOTE | 257 | ||
| macos-release-arm64 | NOTE | 80 | ||
| macos-oldrel-arm64 | NOTE | 75 | ||
| windows-devel | NOTE | 92 | ||
| windows-release | NOTE | 101 | ||
| windows-oldrel | NOTE | 85 | ||
| wasm-release | OK | 147 |
Exports:effectPDFgewistLevene
Dependencies:abindbackportsbootbroomcarcarDataclicolorspacecowplotcpp11DerivdoBydplyrfarverforecastFormulafracdiffgenericsggplot2gluegtableisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Environment Wide Interaction Search Threshold | GEWIST-package GEWIST |
| Genetic interaction testing given effect size distribution | effectPDF |
| Genome Environment Wide Interaction Search Threshold with Levene's test | gewistLevene |
