Package: FinfoMDS 1.3.0

Soobin Kim

FinfoMDS: Multidimensional Scaling with F-ratio for microbiome visualization

F-informed MDS is a new multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels).

Authors:Soobin Kim [aut, cre], Hyungseok Kim [aut]

FinfoMDS_1.3.0.tar.gz
FinfoMDS_1.3.0.zip(r-4.7)FinfoMDS_1.3.0.zip(r-4.6)FinfoMDS_1.3.0.zip(r-4.5)
FinfoMDS_1.3.0.tgz(r-4.6-any)FinfoMDS_1.3.0.tgz(r-4.5-any)
FinfoMDS_1.3.0.tar.gz(r-4.7-any)FinfoMDS_1.3.0.tar.gz(r-4.6-any)
FinfoMDS_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
FinfoMDS/json (API)
NEWS

# Install 'FinfoMDS' in R:
install.packages('FinfoMDS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/soob-kim/finfomds/issues

Datasets:

On BioConductor:FinfoMDS-1.3.0(bioc 3.24)FinfoMDS-1.2.0(bioc 3.23)

dimensionreductionmultidimensionalscalingvisualizationmicrobiome

4.78 score 2 stars 2 scripts 190 downloads 7 exports 57 dependencies

Last updated from:ca0a81513d. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE172
linux-devel-x86_64OK282
source / vignettesOK250
linux-release-x86_64OK274
macos-release-arm64OK220
macos-oldrel-arm64OK172
windows-develOK189
windows-releaseOK209
windows-oldrelOK199
wasm-releaseOK116

Exports:fmdsgetDistMatgetIndMatgetPmdsObjpairByRankpseudoF

Dependencies:ade4apeBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscpp11crayondata.tabledigestfarverforeachgenericsggplot2gluegtableigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmulttestnlmepermutephyloseqpixmappkgconfigplyrR6RColorBrewerRcppRcppArmadilloreshape2rlangS4VectorsS7scalesSeqinfospstringistringrsurvivalvctrsveganviridisLitewithrXVector

FinfoMDS: Multidimensional scaling informed by F-statistic

Rendered fromFinfoMDS.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-09-03
Started: 2025-05-21