Package: FeatSeekR 1.13.0

Tuemay Capraz

FeatSeekR: FeatSeekR an R package for unsupervised feature selection

FeatSeekR performs unsupervised feature selection using replicated measurements. It iteratively selects features with the highest reproducibility across replicates, after projecting out those dimensions from the data that are spanned by the previously selected features. The selected a set of features has a high replicate reproducibility and a high degree of uniqueness.

Authors:Tuemay Capraz [cre, aut]

FeatSeekR_1.13.0.tar.gz
FeatSeekR_1.13.0.zip(r-4.7)FeatSeekR_1.13.0.zip(r-4.6)FeatSeekR_1.13.0.zip(r-4.5)
FeatSeekR_1.13.0.tgz(r-4.6-any)FeatSeekR_1.13.0.tgz(r-4.5-any)
FeatSeekR_1.13.0.tar.gz(r-4.7-any)FeatSeekR_1.13.0.tar.gz(r-4.6-any)
FeatSeekR_1.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FeatSeekR/json (API)

# Install 'FeatSeekR' in R:

install.packages('FeatSeekR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tcapraz/featseekr/issues

On BioConductor:FeatSeekR-1.13.0(bioc 3.24)FeatSeekR-1.12.0(bioc 3.23)

software statisticalmethod featureextraction massspectrometry

4.30 score 2 stars 3 scripts 4 exports 31 dependencies

Last updated from:c28c249bcd. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	176
linux-devel-x86_64	NOTE	285
source / vignettes	OK	214
linux-release-x86_64	NOTE	256
macos-release-arm64	NOTE	133
macos-oldrel-arm64	NOTE	126
windows-devel	NOTE	176
windows-release	NOTE	183
windows-oldrel	NOTE	201
wasm-release	OK	120

Exports:FeatSeek plotSelectedFeatures plotVarianceExplained simData

Dependencies:abind Biobase BiocGenerics cli DelayedArray farver generics GenomicRanges glue gtable IRanges labeling lattice lifecycle MASS Matrix MatrixGenerics matrixStats pheatmap pracma R6 RColorBrewer rlang S4Arrays S4Vectors scales Seqinfo SparseArray SummarizedExperiment viridisLite XVector

FeatSeekR user guide

Introduction | Installation | Feature selection on simulated data | Session Info

Rendered fromFeatSeekR-vignette.Rmdusingknitr::rmarkdown

Last update: 2025-01-28
Started: 2021-11-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
FeatSeek	FeatSeek
FeatSeekR an R package for unsupervised feature selection	FeatSeekR
plotSelectedFeatures	plotSelectedFeatures
plotVarianceExplained	plotVarianceExplained
simData	simData