{ "_id": "6a1ad1841d7bb097a09e22d7", "Package": "FeatSeekR", "Type": "Package", "Title": "FeatSeekR an R package for unsupervised feature selection", "Version": "1.13.0", "Authors@R": "person(\"Tuemay\", \"Capraz\",\nemail = \"tuemay.capraz@embl.de\",\nrole = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-2547-067X\" ))", "Description": "FeatSeekR performs unsupervised feature selection using\nreplicated measurements. It iteratively selects features with\nthe highest reproducibility across replicates, after projecting\nout those dimensions from the data that are spanned by the\npreviously selected features. The selected a set of features\nhas a high replicate reproducibility and a high degree of\nuniqueness.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "BugReports": "https://github.com/tcapraz/FeatSeekR/issues", "URL": "https://github.com/tcapraz/FeatSeekR", "biocViews": "Software, StatisticalMethod, FeatureExtraction,\nMassSpectrometry", "Config/testthat/edition": "3", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:00:40 UTC", "RemoteUrl": "https://github.com/bioc/FeatSeekR", "RemoteRef": "HEAD", "RemoteSha": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:28:01 UTC", "User": "root" }, "Author": "Tuemay Capraz [cre, aut] (ORCID:\n)", "Maintainer": "Tuemay Capraz ", "MD5sum": "a4723123e01ad5522d487b6c61fcb460", "_user": "bioc", "_type": "src", "_file": "FeatSeekR_1.13.0.tar.gz", "_fileid": "95e4da53dde7e390c9e2f29df799678200e4a512b3953f1fcd2f7c4b2c6e2908", "_filesize": 213715, "_sha256": "95e4da53dde7e390c9e2f29df799678200e4a512b3953f1fcd2f7c4b2c6e2908", "_created": "2026-05-30T08:28:01.000Z", "_published": "2026-05-30T12:01:08.038Z", "_jobs": [ { "job": 78636589581, "time": 177, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7306844453" }, { "job": 78636589597, "time": 246, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306851502" }, { "job": 78636589590, "time": 247, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306851654" }, { "job": 78636589600, "time": 127, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7308010121" }, { "job": 78636589588, "time": 222, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7308017766" }, { "job": 78636417927, "time": 203, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306827739" }, { "job": 78636589589, "time": 107, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306837821" }, { "job": 78636589604, "time": 180, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306844825" }, { "job": 78636589612, "time": 179, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306844794" }, { "job": 78636589611, "time": 170, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306843781" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 3 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/FeatSeekR", "_commit": { "id": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381240 }, "_maintainer": { "name": "Tuemay Capraz", "email": "tuemay.capraz@embl.de", "orcid": "0000-0002-2547-067X" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "pheatmap", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "pracma", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.13.0", "bioc": "3.24" }, { "branch": "release", "version": "1.12.0", "bioc": "3.23" } ], "_topics": [ "software", "statisticalmethod", "featureextraction", "massspectrometry" ], "_stars": 2, "_contributors": [ { "user": "jwokaty", "count": 8, "uuid": 1744257 }, { "user": "tcapraz", "count": 1, "uuid": 58771919 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 266, "source": "https://www.bioconductor.org/packages/stats/bioc/FeatSeekR" }, "_devurl": "https://github.com/tcapraz/featseekr", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/FeatSeekR.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/tcapraz/featseekr", "_realowner": "bioc", "_cranurl": false, "_exports": [ "FeatSeek", "plotSelectedFeatures", "plotVarianceExplained", "simData" ], "_help": [ { "page": "FeatSeek", "title": "FeatSeek", "topics": [ "FeatSeek" ] }, { "page": "FeatSeekR", "title": "FeatSeekR an R package for unsupervised feature selection", "topics": [ "FeatSeekR" ] }, { "page": "plotSelectedFeatures", "title": "plotSelectedFeatures", "topics": [ "plotSelectedFeatures" ] }, { "page": "plotVarianceExplained", "title": "plotVarianceExplained", "topics": [ "plotVarianceExplained" ] }, { "page": "simData", "title": "simData", "topics": [ "simData" ] } ], "_readme": "https://github.com/bioc/FeatSeekR/raw/HEAD/README.md", "_rundeps": [ "abind", "Biobase", "BiocGenerics", "cli", "DelayedArray", "farver", "generics", "GenomicRanges", "glue", "gtable", "IRanges", "labeling", "lattice", "lifecycle", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "pheatmap", "pracma", "R6", "RColorBrewer", "rlang", "S4Arrays", "S4Vectors", "scales", "Seqinfo", "SparseArray", "SummarizedExperiment", "viridisLite", "XVector" ], "_vignettes": [ { "source": "FeatSeekR-vignette.Rmd", "filename": "FeatSeekR-vignette.html", "title": "FeatSeekR user guide", "author": "Tuemay Capraz", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Feature selection on simulated data", "Session Info" ], "created": "2021-11-24 14:14:59", "modified": "2025-01-28 10:56:21", "commits": 21 } ], "_score": 4.301029995663981, "_indexed": true, "_nocasepkg": "featseekr", "_universes": [ "bioc", "tcapraz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.13.0", "date": "2026-05-30T08:30:50.000Z", "distro": "noble", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "a7bbf02ea43170f074ef9b7dd52113092ecd7fcc7033cf005380df303f1881c6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.6.0", "os": "linux", "version": "1.13.0", "date": "2026-05-30T08:30:53.000Z", "distro": "noble", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "64b10513a6e113bc6d34f564383d4a70166e4223f89eaefb2c7ef5dfad36c439", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.5.3", "os": "mac", "version": "1.13.0", "date": "2026-05-30T11:58:21.000Z", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "4682cbf3cef823e5fecc0015b7fa5fc8f48511825297af6a767a2cf0fae3eb78", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.6.0", "os": "mac", "version": "1.13.0", "date": "2026-05-30T11:58:52.000Z", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "4fa4fe00813d6e965c63e7aa1031ea758b4e8f87a192d32587958b899cb49380", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.6.0", "os": "wasm", "version": "1.13.0", "date": "2026-05-30T08:30:17.000Z", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "f1f7f55107875d0547048321e3ae40a951d710b99298cdeabe5f519d3af4189f", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.7.0", "os": "win", "version": "1.13.0", "date": "2026-05-30T08:29:30.000Z", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "ee5b099e8ff8df9bef4bb81e6e2e0cf3ab9c4cfff606aa0c4b42424edf323bad", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.5.3", "os": "win", "version": "1.13.0", "date": "2026-05-30T08:29:28.000Z", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "af97d84d7d71e3b8c64f3517d33d693264cb567ce90d5f8a6894f645602a4433", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" }, { "r": "4.6.0", "os": "win", "version": "1.13.0", "date": "2026-05-30T08:29:29.000Z", "commit": "c28c249bcd22b2470dbc7bc09e11d600005116a6", "fileid": "d7476a52e099fb4e68cc5dcd7791d01d33ab54a8cf362becc77d0a72e30c0bf4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679173737" } ] }