Package: FastqCleaner 1.31.0

Leandro Roser

FastqCleaner: A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files

An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.

Authors:Leandro Roser [aut, cre], Fernán Agüero [aut], Daniel Sánchez [aut]

FastqCleaner_1.31.0.tar.gz
FastqCleaner_1.31.0.zip(r-4.7-x86_64)FastqCleaner_1.31.0.zip(r-4.7-arm64)FastqCleaner_1.31.0.zip(r-4.6-x86_64)FastqCleaner_1.31.0.zip(r-4.6-arm64)FastqCleaner_1.31.0.zip(r-4.5-x86_64)
FastqCleaner_1.31.0.tgz(r-4.6-x86_64)FastqCleaner_1.31.0.tgz(r-4.6-arm64)FastqCleaner_1.31.0.tgz(r-4.5-x86_64)FastqCleaner_1.31.0.tgz(r-4.5-arm64)
FastqCleaner_1.31.0.tar.gz(r-4.7-arm64)FastqCleaner_1.31.0.tar.gz(r-4.7-x86_64)FastqCleaner_1.31.0.tar.gz(r-4.6-arm64)FastqCleaner_1.31.0.tar.gz(r-4.6-x86_64)
FastqCleaner_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FastqCleaner/json (API)

# Install 'FastqCleaner' in R:
install.packages('FastqCleaner', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:FastqCleaner-1.31.0(bioc 3.24)FastqCleaner-1.30.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontrolsequencingsoftwaresangerseqsequencematchingcpp

3.00 score 5 scripts 558 downloads 1 mentions 16 exports 78 dependencies

Last updated from:c6bf45ea5d. Checks:1 NOTE, 14 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE151
linux-devel-arm64ERROR237
linux-devel-x86_64ERROR341
source / vignettesERROR246
linux-release-arm64ERROR251
linux-release-x86_64ERROR346
macos-release-arm64ERROR174
macos-release-x86_64ERROR367
macos-oldrel-arm64ERROR167
macos-oldrel-x86_64ERROR596
windows-devel-arm64ERROR282
windows-devel-x86_64ERROR263
windows-release-arm64ERROR281
windows-release-x86_64ERROR162
windows-oldrel-x86_64ERROR219
wasm-releaseOK132

Exports:adapter_filtercheck_encodingcomplex_filterfixed_filterinject_letter_randomlaunch_fqclength_filtern_filterqmean_filterrandom_lengthrandom_qualrandom_seqseq_filterseq_namestrim3q_filterunique_filter

Dependencies:base64encBHBiobaseBiocGenericsBiocParallelBiostringsbitopsbslibcachemcigarilloclicodetoolscommonmarkcpp11crayoncrosstalkdeldirdigestDTevaluatefastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesgluehighrhtmltoolshtmlwidgetshttpuvhwriterinterpIRangesjpegjquerylibjsonliteknitrlambda.rlaterlatticelatticeExtralazyevallifecyclemagrittrMASSmemoisemimeotelpngpromisespwalignR6rappdirsRColorBrewerRcppRcppEigenRhtslibrlangrmarkdownRsamtoolsS4VectorssassSeqinfoshinyshinyBSShortReadsnowsourcetoolstinytexwithrxfunxtableXVectoryaml