{ "_id": "6a1ad29f1d7bb097a09e3075", "Package": "FastqCleaner", "Type": "Package", "Title": "A Shiny Application for Quality Control, Filtering and Trimming\nof FASTQ Files", "Version": "1.31.0", "Date": "2022-05-01", "Authors@R": "c(person(given = \"Leandro\", family = \"Roser\", role = c(\"aut\", \"cre\"), \nemail = \"learoser@gmail.com\"),\nperson(given = \"Fernán\", family = \"Agüero\", role = \"aut\"),\nperson(given = \"Daniel\", family = \"Sánchez\", role = \"aut\"))", "Description": "An interactive web application for quality control,\nfiltering and trimming of FASTQ files. This user-friendly tool\ncombines a pipeline for data processing based on Biostrings and\nShortRead infrastructure, with a cutting-edge visual\nenvironment. Single-Read and Paired-End files can be locally\nprocessed. Diagnostic interactive plots (CG content, per-base\nsequence quality, etc.) are provided for both the input and\noutput files.", "License": "MIT + file LICENSE", "Collate": "'roxygen.auxiliar.R' 'auxiliar.R' 'matching.R'\n'server_functions.R' 'n_filter.R' 'seq_filter.R'\n'complex_filter.R' 'adapter_filter.R' 'launch_fqc.R'\n'length_filter.R' 'fixed_filter.R' 'trim3q_filter.R'\n'unique_filter.R' 'plotObjects.R' 'qmean_filter.R' 'simulate.R'\n'RcppExports.R'", "biocViews": "QualityControl,Sequencing,Software,SangerSeq,SequenceMatching", "VignetteBuilder": "knitr", "Packaged": { "Date": "2026-05-30 08:32:46 UTC", "User": "root" }, "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "Config/pak/sysreqs": "cmake make libbz2-dev libjpeg-dev liblzma-dev\nlibpng-dev libuv1-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:48:05 UTC", "RemoteUrl": "https://github.com/bioc/FastqCleaner", "RemoteRef": "HEAD", "RemoteSha": 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{ "page": "n_filter", "title": "Remove sequences with non-identified bases (Ns) from a ShortReadQ object", "topics": [ "n_filter" ] }, { "page": "qmean_filter", "title": "Filter sequences by their average quality", "topics": [ "qmean_filter" ] }, { "page": "random_length", "title": "Create a named object with random sequences and qualities", "topics": [ "random_length" ] }, { "page": "random_qual", "title": "Create random qualities for a given encoding", "topics": [ "random_qual" ] }, { "page": "random_seq", "title": "Create random sequences", "topics": [ "random_seq" ] }, { "page": "seq_filter", "title": "Remove a set of sequences", "topics": [ "seq_filter" ] }, { "page": "seq_names", "title": "Create sequences names", "topics": [ "seq_names" ] }, { "page": "trim3q_filter", "title": "Filter sequences with low quality in 3' tails", "topics": [ "trim3q_filter" ] }, { "page": "unique_filter", "title": "Remove duplicated sequences in a FASTQ file", "topics": [ "unique_filter" ] } ], 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