Package: FRGEpistasis 1.43.0
Futao Zhang
FRGEpistasis: Epistasis Analysis for Quantitative Traits by Functional Regression Model
A Tool for Epistasis Analysis Based on Functional Regression Model
Authors:
FRGEpistasis_1.43.0.tar.gz
FRGEpistasis_1.43.0.zip(r-4.5)FRGEpistasis_1.43.0.zip(r-4.4)FRGEpistasis_1.43.0.zip(r-4.3)
FRGEpistasis_1.43.0.tgz(r-4.4-any)FRGEpistasis_1.43.0.tgz(r-4.3-any)
FRGEpistasis_1.43.0.tar.gz(r-4.5-noble)FRGEpistasis_1.43.0.tar.gz(r-4.4-noble)
FRGEpistasis_1.43.0.tgz(r-4.4-emscripten)FRGEpistasis_1.43.0.tgz(r-4.3-emscripten)
FRGEpistasis.pdf |FRGEpistasis.html✨
FRGEpistasis/json (API)
NEWS
| # Install 'FRGEpistasis' in R: |
| install.packages('FRGEpistasis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:FRGEpistasis-1.43.0(bioc 3.21)FRGEpistasis-1.42.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsnetworkinferencegeneticvariabilitysoftware
Last updated 3 months agofrom:4b9608b69b. Checks:1 OK, 6 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 14 2025 |
| R-4.5-win | NOTE | Jan 14 2025 |
| R-4.5-linux | NOTE | Jan 14 2025 |
| R-4.4-win | NOTE | Jan 14 2025 |
| R-4.4-mac | NOTE | Jan 14 2025 |
| R-4.3-win | NOTE | Jan 14 2025 |
| R-4.3-mac | NOTE | Jan 14 2025 |
Exports:fourierExpansionfRGEpistasisfrgEpistasisTestfRGInteractioninnerEpiinnerSnpListInteractionlogTransPhenoouterEpiouterSnpListInteractionpCAInteractionpCAPiontwiseEpistasispointwiseInteractionrankTransPhenoreduceGenosnpPairInteraction
Dependencies:ashbitopscliclustercolorspacedeSolvefansifarverfdafdsFNNggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmulticoolmunsellmvtnormnlmepcaPPpillarpkgconfigpracmaR6rainbowRColorBrewerRcppRCurlrlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Package of Epistasis Detection by Functional Regression Model | FRGEpistasis-package FRGEpistasis |
| Fourier Expansion of Genotype | fourierExpansion |
| Genome Wide Epistasis Study by Functional Regress Model | fRGEpistasis |
| Epistasis Test by Functional Regression Model | frgEpistasisTest |
| Interaction Test by Functional Regression Model | fRGInteraction |
| Epistasis Detection Inner one Chromosome | innerEpi |
| Pairwise Interaction Test Inner The Same SNP List | innerSnpListInteraction |
| logarithmic transformation | logTransPheno |
| Epistasis Detection Outer Chromosomes | outerEpi |
| Pairwise Interaction Test Outer The SNP Lists | outerSnpListInteraction |
| Epistasis Test by Principal Component Analysis | pCAInteraction |
| Epistasis Test by PCA Method and Piontwise Method | pCAPiontwiseEpistasis |
| Pointwise Interaction Test | pointwiseInteraction |
| Rank-Based Inverse Normal Transformation | rankTransPheno |
| Reduction Dimension of Genotype | reduceGeno |
| SNP-SNP interaction | snpPairInteraction |
