1 Introduction | 2 Installing FRGEpistasis | 3 Data Formats | 4 Implementation | 5 Questions and Bug Reports
Package: FRGEpistasis 1.49.0
Futao Zhang
FRGEpistasis: Epistasis Analysis for Quantitative Traits by Functional Regression Model
A Tool for Epistasis Analysis Based on Functional Regression Model
Authors:
FRGEpistasis_1.49.0.tar.gz
FRGEpistasis_1.49.0.zip(r-4.7)FRGEpistasis_1.49.0.zip(r-4.6)FRGEpistasis_1.49.0.zip(r-4.5)
FRGEpistasis_1.49.0.tgz(r-4.6-any)FRGEpistasis_1.49.0.tgz(r-4.5-any)
FRGEpistasis_1.49.0.tar.gz(r-4.7-any)FRGEpistasis_1.49.0.tar.gz(r-4.6-any)
FRGEpistasis_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FRGEpistasis/json (API)
| # Install 'FRGEpistasis' in R: |
| install.packages('FRGEpistasis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:FRGEpistasis-1.49.0(bioc 3.24)FRGEpistasis-1.48.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsnetworkinferencegeneticvariabilitysoftware
Last updated from:c4a2366dbb. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 168 | ||
| linux-devel-x86_64 | NOTE | 198 | ||
| source / vignettes | OK | 176 | ||
| linux-release-x86_64 | NOTE | 206 | ||
| macos-release-arm64 | NOTE | 104 | ||
| macos-oldrel-arm64 | NOTE | 114 | ||
| windows-devel | NOTE | 122 | ||
| windows-release | NOTE | 124 | ||
| windows-oldrel | NOTE | 138 | ||
| wasm-release | OK | 136 |
Exports:fourierExpansionfRGEpistasisfrgEpistasisTestfRGInteractioninnerEpiinnerSnpListInteractionlogTransPhenoouterEpiouterSnpListInteractionpCAInteractionpCAPiontwiseEpistasispointwiseInteractionrankTransPhenoreduceGenosnpPairInteraction
Dependencies:ashbitopscliclustercolorspacecpp11deSolvefarverfdafdsFNNggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitMASSMatrixmclustmgcvmulticoolmvtnormnlmepcaPPpracmaR6rainbowRColorBrewerRcppRCurlrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Package of Epistasis Detection by Functional Regression Model | FRGEpistasis-package FRGEpistasis |
| Fourier Expansion of Genotype | fourierExpansion |
| Genome Wide Epistasis Study by Functional Regress Model | fRGEpistasis |
| Epistasis Test by Functional Regression Model | frgEpistasisTest |
| Interaction Test by Functional Regression Model | fRGInteraction |
| Epistasis Detection Inner one Chromosome | innerEpi |
| Pairwise Interaction Test Inner The Same SNP List | innerSnpListInteraction |
| logarithmic transformation | logTransPheno |
| Epistasis Detection Outer Chromosomes | outerEpi |
| Pairwise Interaction Test Outer The SNP Lists | outerSnpListInteraction |
| Epistasis Test by Principal Component Analysis | pCAInteraction |
| Epistasis Test by PCA Method and Piontwise Method | pCAPiontwiseEpistasis |
| Pointwise Interaction Test | pointwiseInteraction |
| Rank-Based Inverse Normal Transformation | rankTransPheno |
| Reduction Dimension of Genotype | reduceGeno |
| SNP-SNP interaction | snpPairInteraction |
