{ "_id": "6adf0e0a99abf48473f4dd75", "Package": "FRGEpistasis", "Type": "Package", "Title": "Epistasis Analysis for Quantitative Traits by Functional\nRegression Model", "biocViews": "Genetics, NetworkInference, GeneticVariability, Software", "Version": "1.49.0", "Date": "2014-03-24", "Author": "Futao Zhang", "Maintainer": "Futao Zhang ", "Description": "A Tool for Epistasis Analysis Based on Functional\nRegression Model", "License": "GPL-2", "Config/pak/sysreqs": "libgmp3-dev make", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:38:57 UTC", "RemoteUrl": "https://github.com/bioc/FRGEpistasis", "RemoteRef": "HEAD", "RemoteSha": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-26 08:19:12 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "FRGEpistasis_1.49.0.tar.gz", "_fileid": "https://r2.ropensci.org/45679077124b50ff77ffccb09628a16a92a6d321051761129107a88fe1c631b5", "_filesize": 364589, "_sha256": "45679077124b50ff77ffccb09628a16a92a6d321051761129107a88fe1c631b5", "_expires": "2027-02-03T08:23:36.000Z", "_created": "2026-10-26T08:19:12.000Z", "_published": "2026-10-26T08:23:38.122Z", "_upstream": "https://github.com/bioc/FRGEpistasis", "_status": "success", "_maintainer": { "name": "Futao Zhang", "email": "futoaz@gmail.com", "login": "fzhang79", "description": "", "uuid": 12928909 }, "_jobs": [ { "job": 121467295032, "time": 134, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "12636662510" }, { "job": 121467295176, "time": 225, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12636333516" }, { "job": 121467295264, "time": 199, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12636133865" }, { "job": 121467295245, "time": 162, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12636143714" }, { "job": 121467295172, "time": 140, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12636062762" }, { "job": 121464841612, "time": 395, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12636128214" }, { "job": 121467295327, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12635882993" }, { "job": 121467295197, "time": 119, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12636568650" }, { "job": 121467295279, "time": 128, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12636725051" }, { "job": 121467295331, "time": 133, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12636662506" } ], "_bioccheck": { "error": 2, "warning": 4, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385", "_commit": { "id": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379937 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.15", "role": "Depends" }, { "package": "MASS", "role": "Depends" }, { "package": "fda", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "utils", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "genetics", "networkinference", "geneticvariability", "software" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 479, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 472, "source": "https://www.bioconductor.org/packages/stats/bioc/FRGEpistasis" }, "_mentions": 1, "_searchresults": 9, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/FRGEpistasis.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "fourierExpansion", "fRGEpistasis", "frgEpistasisTest", "fRGInteraction", "innerEpi", "innerSnpListInteraction", "logTransPheno", "outerEpi", "outerSnpListInteraction", "pCAInteraction", "pCAPiontwiseEpistasis", "pointwiseInteraction", "rankTransPheno", "reduceGeno", "snpPairInteraction" ], "_help": [ { "page": "FRGEpistasis-package", "title": "Package of Epistasis Detection by Functional Regression Model", "topics": [ "FRGEpistasis-package", "FRGEpistasis" ] }, { "page": "fourierExpansion", "title": "Fourier Expansion of Genotype", "topics": [ "fourierExpansion" ] }, { "page": "fRGEpistasis", "title": "Genome Wide Epistasis Study by Functional Regress Model", "topics": [ "fRGEpistasis" ] }, { "page": "frgEpistasisTest", "title": "Epistasis Test by Functional Regression Model", "topics": [ "frgEpistasisTest" ] }, { "page": "fRGInteraction", "title": "Interaction Test by Functional Regression Model", "topics": [ "fRGInteraction" ] }, { "page": "innerEpi", "title": "Epistasis Detection Inner one Chromosome", "topics": [ "innerEpi" ] }, { "page": "innerSnpListInteraction", "title": "Pairwise Interaction Test Inner The Same SNP List", "topics": [ "innerSnpListInteraction" ] }, { "page": "logTransPheno", "title": "logarithmic transformation", "topics": [ "logTransPheno" ] }, { "page": "outerEpi", "title": "Epistasis Detection Outer Chromosomes", "topics": [ "outerEpi" ] }, { "page": "outerSnpListInteraction", "title": "Pairwise Interaction Test Outer The SNP Lists", "topics": [ "outerSnpListInteraction" ] }, { "page": "pCAInteraction", "title": "Epistasis Test by Principal Component Analysis", "topics": [ "pCAInteraction" ] }, { "page": "pCAPiontwiseEpistasis", "title": "Epistasis Test by PCA Method and Piontwise Method", "topics": [ "pCAPiontwiseEpistasis" ] }, { "page": "pointwiseInteraction", "title": "Pointwise Interaction Test", "topics": [ "pointwiseInteraction" ] }, { "page": "rankTransPheno", "title": "Rank-Based Inverse Normal Transformation", "topics": [ "rankTransPheno" ] }, { "page": "reduceGeno", "title": "Reduction Dimension of Genotype", "topics": [ "reduceGeno" ] }, { "page": "snpPairInteraction", "title": "SNP-SNP interaction", "topics": [ "snpPairInteraction" ] } ], "_rundeps": [ "ash", "bitops", "cli", "cluster", "colorspace", "cpp11", "deSolve", "farver", "fda", "fds", "FNN", "ggplot2", "glue", "gmp", "gtable", "hdrcde", "isoband", "kernlab", "KernSmooth", "ks", "labeling", "lattice", "lifecycle", "locfit", "MASS", "Matrix", "mclust", "mgcv", "multicool", "mvtnorm", "nlme", "pcaPP", "pracma", "R6", "rainbow", "RColorBrewer", "Rcpp", "RCurl", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "FRGEpistasis.Rnw", "filename": "FRGEpistasis.pdf", "title": "FRGEpistasis: A Tool for Epistasis Analysis Based on Functional Regression Model", "engine": "utils::Sweave", "headings": [ "1 Introduction", "2 Installing FRGEpistasis", "3 Data Formats", "4 Implementation", "5 Questions and Bug Reports" ], "created": "2014-03-27 21:47:10", "modified": "2018-08-30 17:48:53", "commits": 2 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "frgepistasis", "_universes": [ "bioc", "fzhang79" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.49.0", "date": "2026-10-26T08:22:05.000Z", "distro": "resolute", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/b7658136ed31ced0877cfc01eca5b92d3afc59c35f005ebc1b1a8b35b5846696", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.6.1", "os": "linux", "version": "1.49.0", "date": "2026-10-26T08:21:45.000Z", "distro": "resolute", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/00cbf9cf2b66f06d5bfd60ef4312bf4c2357c6c3b65c4e014d76ef3e526529b7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.5.3", "os": "mac", "version": "1.49.0", "date": "2026-10-26T08:21:05.000Z", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/7bc445b4f6876f2af15614eacf17707261cb78ab300e4b52f272947ac41d67fb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.6.1", "os": "mac", "version": "1.49.0", "date": "2026-10-26T08:20:51.000Z", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/97f33ae0f91f0c2b2798ffeac66af9f8ff319ce0ebb7614609859207d558b3ad", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.6.0", "os": "wasm", "version": "1.49.0", "date": "2026-10-26T08:21:13.000Z", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/e47399425fefb790e5f8163876d14ab71f4ebb661d9f3dc66b05f269772de2f5", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.7.0", "os": "win", "version": "1.49.0", "date": "2026-10-26T08:20:26.000Z", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/ab1799944b9ea40dc67eb9cb80b8f6b47d6d65ae80691649329bcf4c9754fa52", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.5.3", "os": "win", "version": "1.49.0", "date": "2026-10-26T08:20:25.000Z", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/413d009c835313d9f761a4b068b8fb302316dfb7ef84f64c2042c48b2397c94e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" }, { "r": "4.6.1", "os": "win", "version": "1.49.0", "date": "2026-10-26T08:20:29.000Z", "commit": "c4a2366dbb0ec55016408c1c8534499b06e82f8a", "fileid": "https://r2.ropensci.org/f0ce4946fe0f05810cd848ff5c4530b3cabaa31ff45c7fdfde32354f51ed901b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40290676385" } ] }