Package: FISHalyseR 1.47.0

Karesh Arunakirinathan

FISHalyseR: FISHalyseR a package for automated FISH quantification

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Authors:Karesh Arunakirinathan <[email protected]>, Andreas Heindl <[email protected]>

FISHalyseR_1.47.0.tar.gz
FISHalyseR_1.47.0.zip(r-4.7)FISHalyseR_1.47.0.zip(r-4.6)FISHalyseR_1.47.0.zip(r-4.5)
FISHalyseR_1.47.0.tgz(r-4.6-any)FISHalyseR_1.47.0.tgz(r-4.5-any)
FISHalyseR_1.47.0.tar.gz(r-4.7-any)FISHalyseR_1.47.0.tar.gz(r-4.6-any)
FISHalyseR_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
FISHalyseR/json (API)
NEWS

# Install 'FISHalyseR' in R:
install.packages('FISHalyseR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:FISHalyseR-1.47.0(bioc 3.24)FISHalyseR-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cellbiology

3.30 score 8 scripts 324 downloads 5 exports 38 dependencies

Last updated from:5e52a472ed. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR157
linux-devel-x86_64WARNING147
source / vignettesOK188
linux-release-x86_64WARNING176
macos-release-arm64WARNING85
macos-oldrel-arm64WARNING107
windows-develWARNING89
windows-releaseWARNING91
windows-oldrelWARNING88
wasm-releaseOK113

Exports:analyseParticlescalculateMaxEntropycalculateThresholdcomputeIlluminationCorrectionprocessFISH

Dependencies:abindbase64encBiocGenericsbitopsbslibcachemclidigestEBImageevaluatefastmapfftwtoolsfontawesomefsgenericshighrhtmltoolshtmlwidgetsjpegjquerylibjsonliteknitrlatticelifecyclelocfitmemoisemimepngR6rappdirsRCurlrlangrmarkdownsasstifftinytexxfunyaml

FISHAlyseR Automated fluorescence in situ hybridisation quantification in R

Rendered fromFISHalyseR.Rnwusingknitr::knitron Jun 05 2026.

Last update: 2015-04-01
Started: 2015-04-01