Package: ExperimentHub 2.15.0

Bioconductor Package Maintainer

ExperimentHub: Client to access ExperimentHub resources

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Authors:Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]

ExperimentHub_2.15.0.tar.gz
ExperimentHub_2.15.0.zip(r-4.5)ExperimentHub_2.15.0.zip(r-4.4)ExperimentHub_2.15.0.zip(r-4.3)
ExperimentHub_2.15.0.tgz(r-4.4-any)ExperimentHub_2.15.0.tgz(r-4.3-any)
ExperimentHub_2.15.0.tar.gz(r-4.5-noble)ExperimentHub_2.15.0.tar.gz(r-4.4-noble)
ExperimentHub_2.15.0.tgz(r-4.4-emscripten)ExperimentHub_2.15.0.tgz(r-4.3-emscripten)
ExperimentHub.pdf |ExperimentHub.html✨
ExperimentHub/json (API)
NEWS

# Install 'ExperimentHub' in R:
install.packages('ExperimentHub', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bioconductor/experimenthub/issues

On BioConductor:ExperimentHub-2.13.1(bioc 3.20)ExperimentHub-2.12.0(bioc 3.19)

infrastructuredataimportguithirdpartyclientcore-package

11.11 score 9 stars 58 packages 708 scripts 11k downloads 8 exports 59 dependencies

Last updated 22 days agofrom:dace2c4007. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winWARNINGOct 30 2024
R-4.5-linuxWARNINGOct 30 2024
R-4.4-winWARNINGOct 30 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 30 2024
R-4.3-macWARNINGOct 31 2024

Exports:cachecreateHubAccessorsExperimentHubgetExperimentHubOptionlistResourcesloadResourcespackagesetExperimentHubOption

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpngpurrrR6rappdirsrlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectoryamlzlibbioc

ExperimentHub: Access the ExperimentHub Web Service

Rendered fromExperimentHub.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2023-12-11
Started: 2017-09-25

Readme and manuals

Help Manual

Help pageTopics
ExperimentHub objects and their related methods and functionscache,ExperimentHub-method class:ExperimentHub createHubAccessors ExperimentHub ExperimentHub-class listResources,ExperimentHub-method loadResources,ExperimentHub-method package,ExperimentHub-method recordStatus refreshHub [[,ExperimentHub,character,missing-method [[,ExperimentHub,numeric,missing-method
Get and set options for default ExperimentHub behavior.getExperimentHubOption setExperimentHubOption
Utility functions for discovering package-specific Hub resources.listResources listResources,AnnotationHub-method loadResources loadResources,AnnotationHub-method utilities