ExperimentHub objects | Interactive retrieval of resources with BiocHubsShiny | Using ExperimentHub to retrieve data | Configuring ExperimentHub objects | Creating an ExperimentHub Package or Converting to an ExperimentHub Package | Troubleshooting | Accessing Behind A Proxy | Other configuration options for resource downloading | Group Hub/Cache Access | Default Caching Location Update | Option 1: Move cache and files to new location | Option 2: Create a system environment variable | Option 3: Delete the old cache | Session info
Package: ExperimentHub 3.3.2
Bioconductor Package Maintainer
ExperimentHub: Client to access ExperimentHub resources
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Authors:
ExperimentHub_3.3.2.tar.gz
ExperimentHub_3.3.2.zip(r-4.7-any)ExperimentHub_3.3.2.zip(r-4.6-any)ExperimentHub_3.3.2.zip(r-4.5-any)
ExperimentHub_3.3.2.tgz(r-4.6-any)ExperimentHub_3.3.2.tgz(r-4.5-any)
ExperimentHub_3.3.2.tar.gz(r-4.7-any)ExperimentHub_3.3.2.tar.gz(r-4.6-any)
ExperimentHub_3.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ExperimentHub/json (API)
| # Install 'ExperimentHub' in R: |
| install.packages('ExperimentHub', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/experimenthub/issues
On BioConductor:ExperimentHub-3.3.2(bioc 3.24)ExperimentHub-3.2.2(bioc 3.23)
infrastructuredataimportguithirdpartyclientcore-packageu24ca289073
Last updated from:366356762e. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 165 | ||
| linux-devel | WARNING | 282 | ||
| source / vignettes | OK | 239 | ||
| linux-release | WARNING | 271 | ||
| macos-release | WARNING | 132 | ||
| macos-oldrel | WARNING | 188 | ||
| windows-devel | WARNING | 175 | ||
| windows-release | WARNING | 113 | ||
| windows-oldrel | WARNING | 142 | ||
| wasm-release | OK | 141 |
Exports:cachecreateHubAccessorsExperimentHubgetExperimentHubOptionlistResourcesloadResourcespackagesetExperimentHubOption
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ExperimentHub objects and their related methods and functions | cache,ExperimentHub-method class:ExperimentHub createHubAccessors ExperimentHub ExperimentHub-class listResources,ExperimentHub-method loadResources,ExperimentHub-method package,ExperimentHub-method recordStatus refreshHub [[,ExperimentHub,character,missing-method [[,ExperimentHub,numeric,missing-method |
| Get and set options for default ExperimentHub behavior. | getExperimentHubOption setExperimentHubOption |
| Utility functions for discovering package-specific Hub resources. | listResources listResources,AnnotationHub-method loadResources loadResources,AnnotationHub-method utilities |
