{ "_id": "6a574ee7ff0138dec5d70478", "Package": "ExperimentHub", "Type": "Package", "Title": "Client to access ExperimentHub resources", "Version": "3.3.1", "Authors@R": "c(person(\"Bioconductor Package\", \"Maintainer\", email=\"maintainer@bioconductor.org\",\nrole=\"cre\"),\nperson(\"Martin\", \"Morgan\", role=\"aut\"),\nperson(\"Marc\", \"Carlson\", role=\"ctb\"),\nperson(\"Dan\", \"Tenenbaum\", role=\"ctb\"),\nperson(\"Sonali\", \"Arora\", role=\"ctb\"),\nperson(\"Valerie\", \"Oberchain\", role=\"ctb\"),\nperson(\"Kayla\", \"Morrell\", role=\"ctb\"),\nperson(\"Lori\", \"Shepherd\", role=\"aut\"))", "Description": "This package provides a client for the Bioconductor\nExperimentHub web resource. ExperimentHub provides a central\nlocation where curated data from experiments, publications or\ntraining courses can be accessed. Each resource has associated\nmetadata, tags and date of modification. The client creates and\nmanages a local cache of files retrieved enabling quick and\nreproducible access.", "License": "Artistic-2.0", "biocViews": "Infrastructure, DataImport, GUI, ThirdPartyClient", "URL": "https://github.com/Bioconductor/ExperimentHub", "BugReports": "https://github.com/Bioconductor/ExperimentHub/issues", "VignetteBuilder": "knitr", "RoxygenNote": "7.0.0", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-06-15 17:50:44 UTC", "RemoteUrl": "https://github.com/bioc/ExperimentHub", "RemoteRef": "HEAD", "RemoteSha": "2691e192ad709ac9b0729a08615f4db6567602c6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-15 09:05:47 UTC", "User": "root" }, "Author": "Bioconductor Package Maintainer [cre],\nMartin Morgan [aut],\nMarc Carlson [ctb],\nDan Tenenbaum [ctb],\nSonali Arora [ctb],\nValerie Oberchain [ctb],\nKayla Morrell [ctb],\nLori Shepherd [aut]", "Maintainer": "Bioconductor Package Maintainer ", "_user": "bioc", "_type": "src", "_file": "ExperimentHub_3.3.1.tar.gz", "_fileid": "https://r2.ropensci.org/62f44d8b1e5f34bad563df7d937890ecb374fc49bca0d0d95810d9526bf91ea2", "_filesize": 265366, "_sha256": "62f44d8b1e5f34bad563df7d937890ecb374fc49bca0d0d95810d9526bf91ea2", "_expires": "2026-10-23T09:12:06.000Z", "_created": "2026-07-15T09:05:47.000Z", "_published": "2026-07-15T09:12:07.638Z", "_bioccheck": { "error": 1, "warning": 2, "note": 11 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901", "_status": "failure", "_upstream": "https://github.com/bioc/ExperimentHub", "_commit": { "id": "2691e192ad709ac9b0729a08615f4db6567602c6", "author": "lshep ", "committer": "lshep ", "message": "Update vignette example\n\n - example package and resources were removed\n", "time": 1781545844 }, "_maintainer": { "name": "Bioconductor Package Maintainer", "email": "maintainer@bioconductor.org", "login": "bioconductor-bot", "description": "", "uuid": 11681645 }, "_distro": "resolute", "_jobs": [ { "job": 87312518041, "time": 183, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8338011346" }, { "job": 87312518034, "time": 337, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8338075230" }, { "job": 87312518085, "time": 285, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8338054033" }, { "job": 87312518040, "time": 206, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8338042397" }, { "job": 87312518103, "time": 155, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8338049275" }, { "job": 87311559730, "time": 280, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "8337930734" }, { "job": 87312518039, "time": 184, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8338011808" }, { "job": 87312518060, "time": 181, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "8338010493" }, { "job": 87312518122, "time": 173, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "8338008342" }, { "job": 87312518140, "time": 218, "config": "windows-release", "r": "4.6.1", "check": "WARNING", "artifact": "8338026451" } ], "_registered": true, "_dependencies": [ { "package": "methods", "role": "Depends" }, { "package": "BiocGenerics", "version": ">= 0.15.10", "role": "Depends" }, { "package": "AnnotationHub", "version": ">= 3.99.3", "role": "Depends" }, { "package": "BiocFileCache", "version": ">= 2.99.3", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "BiocManager", "role": "Imports" }, { "package": "rappdirs", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "HubPub", "role": "Suggests" }, { "package": "GenomicAlignments", "role": "Suggests" }, { "package": "ExperimentHubData", "role": "Enhances" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 72, "_updates": [ { "week": "2025-29", "n": 1 }, { "week": "2025-43", "n": 1 }, { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-25", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "3.3.0", "bioc": "3.24" }, { "branch": "release", "version": "3.2.0", "bioc": "3.23" } ], "_topics": [ "infrastructure", "dataimport", "gui", "thirdpartyclient", "core-package", "u24ca289073" ], "_stars": 11, "_contributors": [ { "user": "lshep", "count": 99, "uuid": 18724380 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 15, "uuid": 2746443 }, { "user": "kayla-morrell", "count": 9, "uuid": 32339524 }, { "user": "hpages", "count": 9, "uuid": 8810451 }, { "user": "dtenenba", "count": 5, "uuid": 2286826 }, { "user": "link-ny", "count": 5, "uuid": 4392950 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "mtmorgan", "count": 2, "uuid": 118552 }, { "user": "kjohnsen", "count": 1, "uuid": 19983357 }, { "user": "petehaitch", "count": 1, "uuid": 1049741 }, { "user": "milanmlft", "count": 1, "uuid": 38256462 }, { "user": "mikelove", "count": 1, "uuid": 69203 }, { "user": "lwaldron", "count": 1, "uuid": 639942 }, { "user": "ltla", "count": 1, "uuid": 8166669 }, { "user": "bisaloo", "count": 1, "uuid": 10783929 }, { "user": "federicomarini", "count": 1, "uuid": 7447478 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 447, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 12938, "source": "https://www.bioconductor.org/packages/stats/bioc/ExperimentHub" }, "_mentions": 11, "_devurl": "https://github.com/bioconductor/experimenthub", "_searchresults": 1454, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ExperimentHub.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/bioconductor/experimenthub", "_realowner": "bioc", "_cranurl": false, "_exports": [ "cache", "createHubAccessors", "ExperimentHub", "getExperimentHubOption", "listResources", "loadResources", "package", "setExperimentHubOption" ], "_help": [ { "page": "ExperimentHub-class", "title": "ExperimentHub objects and their related methods and functions", "topics": [ "cache,ExperimentHub-method", "class:ExperimentHub", "createHubAccessors", "ExperimentHub", "ExperimentHub-class", "listResources,ExperimentHub-method", "loadResources,ExperimentHub-method", "package,ExperimentHub-method", "recordStatus", "refreshHub", "[[,ExperimentHub,character,missing-method", "[[,ExperimentHub,numeric,missing-method" ] }, { "page": "getExperimentHubOption", "title": "Get and set options for default ExperimentHub behavior.", "topics": [ "getExperimentHubOption", "setExperimentHubOption" ] }, { "page": "listResources", "title": "Utility functions for discovering package-specific Hub resources.", "topics": [ "listResources", "listResources,AnnotationHub-method", "loadResources", "loadResources,AnnotationHub-method", "utilities" ] } ], "_rundeps": [ "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "fastmap", "filelock", "generics", "glue", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_score": 11.553367976628587, "_indexed": true, "_nocasepkg": "experimenthub", "_universes": [ "bioc", "bioconductor-bot", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.3.1", "date": "2026-07-15T09:10:30.000Z", "distro": "resolute", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/d27621dd26656001069b0019ac9f1a7c5156ac6ae9a477daff574d6a0fa2849a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.6.1", "os": "linux", "version": "3.3.1", "date": "2026-07-15T09:09:38.000Z", "distro": "resolute", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/319c1299e6550a37ad9a721d447b7cdcb092466573e0e24da5941e28f7710a62", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.5.3", "os": "mac", "version": "3.3.1", "date": "2026-07-15T09:09:18.000Z", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/b57c38543a56fbb15ad307d7e45e940a12d0b962dcf1f2923eec04702038a54a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.6.1", "os": "mac", "version": "3.3.1", "date": "2026-07-15T09:09:34.000Z", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/da09452ca2d5c613c327aaf19ea84db0426ecf1840e1e6d69c52e0701939aea0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.6.0", "os": "wasm", "version": "3.3.1", "date": "2026-07-15T09:09:15.000Z", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/da7808c4ad84ab52646c955a2c804ed0b47674e362731d735e65c33fc27465af", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.7.0", "os": "win", "version": "3.3.1", "date": "2026-07-15T09:08:08.000Z", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/ca8abad81499220429beab1f5f0d971a13a73b3195b7852da4cd9f8b73aaee88", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.5.3", "os": "win", "version": "3.3.1", "date": "2026-07-15T09:07:43.000Z", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/08a4cfd60f6fc4dd29af95c289de9845671539b80e2854120007d29bcfec9e50", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" }, { "r": "4.6.1", "os": "win", "version": "3.3.1", "date": "2026-07-15T09:07:32.000Z", "commit": "2691e192ad709ac9b0729a08615f4db6567602c6", "fileid": "https://r2.ropensci.org/5209f72baa5d88ef43396e32c38bf00f5869dc67b8ac28774a4f2258d190b6a2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29402897901" } ] }