Package: EnhancedVolcano 1.25.0

Kevin Blighe

EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling

Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.

Authors:Kevin Blighe [aut, cre], Sharmila Rana [aut], Emir Turkes [ctb], Benjamin Ostendorf [ctb], Andrea Grioni [ctb], Myles Lewis [aut]

EnhancedVolcano_1.25.0.tar.gz
EnhancedVolcano_1.25.0.zip(r-4.5)EnhancedVolcano_1.25.0.zip(r-4.4)EnhancedVolcano_1.25.0.zip(r-4.3)
EnhancedVolcano_1.25.0.tgz(r-4.4-any)EnhancedVolcano_1.25.0.tgz(r-4.3-any)
EnhancedVolcano_1.25.0.tar.gz(r-4.5-noble)EnhancedVolcano_1.25.0.tar.gz(r-4.4-noble)
EnhancedVolcano_1.25.0.tgz(r-4.4-emscripten)EnhancedVolcano_1.25.0.tgz(r-4.3-emscripten)
EnhancedVolcano.pdf |EnhancedVolcano.html
EnhancedVolcano/json (API)
NEWS

# Install 'EnhancedVolcano' in R:
install.packages('EnhancedVolcano', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kevinblighe/enhancedvolcano/issues

On BioConductor:EnhancedVolcano-1.25.0(bioc 3.21)EnhancedVolcano-1.24.0(bioc 3.20)

rnaseqgeneexpressiontranscriptiondifferentialexpressionimmunooncology

12.12 score 415 stars 1 packages 2.6k scripts 6.8k downloads 123 mentions 1 exports 30 dependencies

Last updated 1 months agofrom:88a8e6aebb. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winNOTENov 29 2024
R-4.5-linuxNOTENov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:EnhancedVolcano

Dependencies:clicolorspacefansifarverggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr

EnhancedVolcano: publication-ready volcano plots with enhanced colouring and labeling

Rendered fromEnhancedVolcano.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2021-10-28
Started: 2018-07-10