Package: EnhancedVolcano 1.25.0

Kevin Blighe

EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling

Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.

Authors:Kevin Blighe [aut, cre], Sharmila Rana [aut], Emir Turkes [ctb], Benjamin Ostendorf [ctb], Andrea Grioni [ctb], Myles Lewis [aut]

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EnhancedVolcano.pdf |EnhancedVolcano.html
EnhancedVolcano/json (API)
NEWS

# Install 'EnhancedVolcano' in R:
install.packages('EnhancedVolcano', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kevinblighe/enhancedvolcano/issues

On BioConductor:EnhancedVolcano-1.23.0(bioc 3.20)EnhancedVolcano-1.22.0(bioc 3.19)

rnaseqgeneexpressiontranscriptiondifferentialexpressionimmunooncology

11.37 score 409 stars 2 packages 2.4k scripts 6.6k downloads 1 exports 30 dependencies

Last updated 20 days agofrom:88a8e6aebb. Checks:OK: 1 NOTE: 4 ERROR: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macERROROct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macERROROct 30 2024

Exports:EnhancedVolcano

Dependencies:clicolorspacefansifarverggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr

EnhancedVolcano: publication-ready volcano plots with enhanced colouring and labeling

Rendered fromEnhancedVolcano.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2021-10-28
Started: 2018-07-10