{
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  "Package": "EnhancedVolcano",
  "Type": "Package",
  "Title": "Publication-ready volcano plots with enhanced colouring and\nlabeling",
  "Version": "1.31.0",
  "Authors@R": "c(\nperson(\"Kevin\", \"Blighe\", role = c(\"aut\")),\nperson(\"Jared\", \"Andrews\", email = \"jared.andrews07@gmail.com\", role = c(\"cre\", \"ctb\"), comment = c(ORCID = \"0000-0002-0780-6248\")),\nperson(\"Sharmila\", \"Rana\", role = c(\"aut\")),\nperson(\"Emir\", \"Turkes\", role = c(\"ctb\")),\nperson(\"Benjamin\", \"Ostendorf\", role = c(\"ctb\")),\nperson(\"Andrea\", \"Grioni\", role = c(\"ctb\")),\nperson(\"Myles\", \"Lewis\", role = c(\"aut\")))",
  "Maintainer": "Jared Andrews <jared.andrews07@gmail.com>",
  "Description": "Volcano plots represent a useful way to visualise the\nresults of differential expression analyses. Here, we present a\nhighly-configurable function that produces publication-ready\nvolcano plots. EnhancedVolcano will attempt to fit as many\npoint labels in the plot window as possible, thus avoiding\n'clogging' up the plot with labels that could not otherwise\nhave been read. Other functionality allows the user to identify\nup to 4 different types of attributes in the same plot space\nvia colour, shape, size, and shade parameter configurations.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "URL": "https://github.com/kevinblighe/EnhancedVolcano",
  "biocViews": "RNASeq, GeneExpression, Transcription,\nDifferentialExpression, ImmunoOncology",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:48:32 UTC",
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    "User": "root"
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  "Author": "Kevin Blighe [aut],\nJared Andrews [cre, ctb] (ORCID:\n<https://orcid.org/0000-0002-0780-6248>),\nSharmila Rana [aut],\nEmir Turkes [ctb],\nBenjamin Ostendorf [ctb],\nAndrea Grioni [ctb],\nMyles Lewis [aut]",
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    "geneexpression",
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    "immunooncology"
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      "title": "EnhancedVolcano: publication-ready volcano plots with enhanced colouring and labeling",
      "author": "Kevin Blighe, Sharmila Rana, Myles Lewis",
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        "Installation",
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        "2. Load the package into R session",
        "Quick start",
        "Plot the most basic volcano plot",
        "Advanced features",
        "Modify cut-offs for log2FC and P value; specify title; adjust point and label size",
        "Adjust colour and alpha for point shading",
        "Adjust shape of plotted points",
        "Adjust cut-off lines and add extra threshold lines",
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        "Fit more labels by adding connectors",
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        "Over-ride colour and/or shape scheme with custom key-value pairs",
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        "Highlighting key variables via custom point sizes",
        "Change to continuous colour scheme",
        "Custom axis tick marks",
        "Acknowledgments",
        "Session info",
        "References"
      ],
      "created": "2018-07-10 14:43:13",
      "modified": "2021-10-28 21:07:54",
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