Package: EnMCB 1.17.0
Xin Yu
EnMCB: Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models
Creation of the correlated blocks using DNA methylation profiles. Machine learning models can be constructed to predict differentially methylated blocks and disease progression.
Authors:
EnMCB_1.17.0.tar.gz
EnMCB_1.17.0.zip(r-4.5)EnMCB_1.17.0.zip(r-4.4)EnMCB_1.17.0.zip(r-4.3)
EnMCB_1.17.0.tgz(r-4.4-any)EnMCB_1.17.0.tgz(r-4.3-any)
EnMCB_1.17.0.tar.gz(r-4.5-noble)EnMCB_1.17.0.tar.gz(r-4.4-noble)
EnMCB_1.17.0.tgz(r-4.4-emscripten)EnMCB_1.17.0.tgz(r-4.3-emscripten)
EnMCB.pdf |EnMCB.html✨
EnMCB/json (API)
NEWS
| # Install 'EnMCB' in R: |
| install.packages('EnMCB', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/whirlsyu/enmcb/issues
- anno_matrix - IlluminaHumanMethylation450kanno
- demo_MCBinformation - MCB information.
- demo_data - Expression matrix of demo dataset.
- demo_survival_data - Survival data of demo dataset.
On BioConductor:EnMCB-1.17.0(bioc 3.20)EnMCB-1.16.0(bioc 3.19)
normalizationdnamethylationmethylationarraysupportvectormachine
Last updated 5 months agofrom:89c6ddaf25. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 28 2024 |
| R-4.5-win | OK | Sep 28 2024 |
| R-4.5-linux | OK | Sep 28 2024 |
| R-4.4-win | OK | Sep 28 2024 |
| R-4.4-mac | OK | Sep 28 2024 |
| R-4.3-win | NOTE | Jul 30 2024 |
| R-4.3-mac | NOTE | Jul 30 2024 |
Exports:as.ridgematCompareMCBcreate_demoDiffMCBdraw_survival_curveensemble_modelensemble_predictionfast_roc_calculationIdentifyMCBIdentifyMCB_parallelmetricMCBmetricMCB.cvmulti_coxphpre_process_methylationuniv_coxph
Dependencies:askpassbackportsbase64encBiocFileCachebitbit64blobbootbslibcachemcheckmateclasscliclustercodetoolscolorspacecpp11curldata.tableDBIdbplyrdigestdplyre1071evaluatefansifarverfastmapfilelockfontawesomeforeachforeignFormulafsgenericsggplot2glmnetgluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrigraphinumisobanditeratorsjquerylibjsonlitekernlabknitrlabelinglatticelibcoinlifecyclemagrittrMASSMatrixMatrixModelsmboostmemoisemgcvmimemultcompmunsellmvtnormnlmennetnnlsopensslpartykitpillarpkgconfigplogrpolsplinepracmaproxypurrrquadprogquantregR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrmsrpartRSQLiterstudioapisandwichsassscalesshapeSparseMstabsstringistringrsurvivalsurvivalROCsurvivalsvmsysTH.datatibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunyamlzoo
