Package: EatonEtAlChIPseq 0.51.0

Patrick Aboyoun

EatonEtAlChIPseq: ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

ChIP-seq analysis subset from "Conserved nucleosome positioning defines replication origins" (PMID 20351051)

Authors:Patrick Aboyoun <[email protected]>

EatonEtAlChIPseq_0.51.0.tar.gz
EatonEtAlChIPseq_0.51.0.tar.gz(r-4.7-any)EatonEtAlChIPseq_0.51.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
EatonEtAlChIPseq/json (API)

# Install 'EatonEtAlChIPseq' in R:
install.packages('EatonEtAlChIPseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • orcAlignsRep1 - Alignments of ChIP-seq data to yeast chromosome XIV
  • orcAlignsRep2 - Alignments of ChIP-seq data to yeast chromosome XIV
  • orcPeaksRep1 - Peaks from ChIP-seq alignments to yeast chromosome XIV
  • orcPeaksRep2 - Peaks from ChIP-seq alignments to yeast chromosome XIV

On BioConductor:EatonEtAlChIPseq-0.51.0(data/experiment 3.24)EatonEtAlChIPseq-0.50.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdatasaccharomyces_cerevisiae_datasequencingdatachipseqdatageodatapkg

2.30 score 7 scripts 0 exports 53 dependencies

Last updated from:e9820af31a. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR140
linux-develNOTE281
source / vignettesOK302
linux-releaseNOTE182

Exports:

Dependencies:askpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarillocodetoolscpp11crayoncurldeldirformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangeshttrhwriterinterpIRangesjpegjsonlitelambda.rlatticelatticeExtraMASSmimeopensslpngpwalignR6RColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4VectorsSeqinfoShortReadsnowsysXMLXVectoryaml