Package: EDIRquery 1.7.0
Laura D.T. Vo Ngoc
EDIRquery: Query the EDIR Database For Specific Gene
EDIRquery provides a tool to search for genes of interest within the Exome Database of Interspersed Repeats (EDIR). A gene name is a required input, and users can additionally specify repeat sequence lengths, minimum and maximum distance between sequences, and whether to allow a 1-bp mismatch. Outputs include a summary of results by repeat length, as well as a dataframe of query results. Example data provided includes a subset of the data for the gene GAA (ENSG00000171298). To query the full database requires providing a path to the downloaded database files as a parameter.
Authors:
EDIRquery_1.7.0.tar.gz
EDIRquery_1.7.0.zip(r-4.5)EDIRquery_1.7.0.zip(r-4.4)EDIRquery_1.7.0.zip(r-4.3)
EDIRquery_1.7.0.tgz(r-4.4-any)EDIRquery_1.5.0.tgz(r-4.3-any)
EDIRquery_1.7.0.tar.gz(r-4.5-noble)EDIRquery_1.7.0.tar.gz(r-4.4-noble)
EDIRquery_1.7.0.tgz(r-4.4-emscripten)EDIRquery_1.7.0.tgz(r-4.3-emscripten)
EDIRquery.pdf |EDIRquery.html✨
EDIRquery/json (API)
NEWS
| # Install 'EDIRquery' in R: |
| install.packages('EDIRquery', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- gene_chr - Gene chromosome location
On BioConductor:EDIRquery-1.5.0(bioc 3.20)EDIRquery-1.4.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 23 days agofrom:689294284b. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | NOTE | Oct 30 2024 |
| R-4.3-mac | NOTE | Oct 28 2024 |
Exports:gene_lookup
Dependencies:abindaskpassBiobaseBiocGenericsbitbit64clicliprcpp11crayoncurlDelayedArrayfansiGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehmshttrInteractionSetIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigprettyunitsprogressR6RcppreadrrlangS4ArraysS4VectorsSparseArraySummarizedExperimentsystibbletictoctidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene chromosome location | gene_chr |
| Look Up a Gene in EDIR Dataset | gene_lookup |
