Package: EDIRquery 1.13.0

Laura D.T. Vo Ngoc

EDIRquery: Query the EDIR Database For Specific Gene

EDIRquery provides a tool to search for genes of interest within the Exome Database of Interspersed Repeats (EDIR). A gene name is a required input, and users can additionally specify repeat sequence lengths, minimum and maximum distance between sequences, and whether to allow a 1-bp mismatch. Outputs include a summary of results by repeat length, as well as a dataframe of query results. Example data provided includes a subset of the data for the gene GAA (ENSG00000171298). To query the full database requires providing a path to the downloaded database files as a parameter.

Authors:Laura D.T. Vo Ngoc [aut, cre]

EDIRquery_1.13.0.tar.gz
EDIRquery_1.13.0.zip(r-4.7)EDIRquery_1.13.0.zip(r-4.6)EDIRquery_1.13.0.zip(r-4.5)
EDIRquery_1.13.0.tgz(r-4.6-any)EDIRquery_1.13.0.tgz(r-4.5-any)
EDIRquery_1.13.0.tar.gz(r-4.7-any)EDIRquery_1.13.0.tar.gz(r-4.6-any)
EDIRquery_1.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
EDIRquery/json (API)
NEWS

# Install 'EDIRquery' in R:
install.packages('EDIRquery', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:EDIRquery-1.13.0(bioc 3.24)EDIRquery-1.12.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticssequencematching

4.00 score 1 scripts 274 downloads 1 exports 44 dependencies

Last updated from:c3bebae42b. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE169
linux-devel-x86_64NOTE319
source / vignettesOK232
linux-release-x86_64NOTE291
macos-release-arm64NOTE239
macos-oldrel-arm64NOTE155
windows-develNOTE207
windows-releaseNOTE200
windows-oldrelNOTE195
wasm-releaseOK120

Exports:gene_lookup

Dependencies:abindBiobaseBiocGenericsbitbit64clicliprcpp11crayonDelayedArraygenericsGenomicRangesgluehmsInteractionSetIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspillarpkgconfigprettyunitsprogressR6RcppreadrrlangS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimenttibbletictoctidyselecttzdbutf8vctrsvroomwithrXVector

EDIRquery

Laura D.T. Vo Ngoc

Rendered fromEDIRquery.Rmdusingknitr::rmarkdownon Jun 09 2026.

Last update: 2023-01-16
Started: 2022-08-30