Package: EDIRquery 1.5.0

Laura D.T. Vo Ngoc

EDIRquery: Query the EDIR Database For Specific Gene

EDIRquery provides a tool to search for genes of interest within the Exome Database of Interspersed Repeats (EDIR). A gene name is a required input, and users can additionally specify repeat sequence lengths, minimum and maximum distance between sequences, and whether to allow a 1-bp mismatch. Outputs include a summary of results by repeat length, as well as a dataframe of query results. Example data provided includes a subset of the data for the gene GAA (ENSG00000171298). To query the full database requires providing a path to the downloaded database files as a parameter.

Authors:Laura D.T. Vo Ngoc [aut, cre]

EDIRquery_1.5.0.tar.gz
EDIRquery_1.5.0.zip(r-4.5)EDIRquery_1.5.0.zip(r-4.4)EDIRquery_1.5.0.zip(r-4.3)
EDIRquery_1.5.0.tgz(r-4.4-any)EDIRquery_1.5.0.tgz(r-4.3-any)
EDIRquery_1.5.0.tar.gz(r-4.5-noble)EDIRquery_1.5.0.tar.gz(r-4.4-noble)
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EDIRquery.pdf |EDIRquery.html✨
EDIRquery/json (API)
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On BioConductor:EDIRquery-1.5.0(bioc 3.20)EDIRquery-1.4.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

1 exports 0.36 score 54 dependencies

Last updated 2 months agofrom:e4f000342a

Exports:gene_lookup

Dependencies:abindaskpassBiobaseBiocGenericsbitbit64clicliprcpp11crayoncurlDelayedArrayfansiGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehmshttrInteractionSetIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigprettyunitsprogressR6RcppreadrrlangS4ArraysS4VectorsSparseArraySummarizedExperimentsystibbletictoctidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXVectorzlibbioc