# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "EDIRquery" in publications use:'
type: software
license: GPL-3.0-only
title: 'EDIRquery: Query the EDIR Database For Specific Gene'
version: 1.5.0
abstract: EDIRquery provides a tool to search for genes of interest within the Exome
  Database of Interspersed Repeats (EDIR). A gene name is a required input, and users
  can additionally specify repeat sequence lengths, minimum and maximum distance between
  sequences, and whether to allow a 1-bp mismatch. Outputs include a summary of results
  by repeat length, as well as a dataframe of query results. Example data provided
  includes a subset of the data for the gene GAA (ENSG00000171298). To query the full
  database requires providing a path to the downloaded database files as a parameter.
authors:
- family-names: Vo Ngoc
  given-names: Laura D.T.
  email: doan.vongoc@vub.be
  orcid: https://orcid.org/0000-0002-1597-900X
preferred-citation:
  type: article
  title: 'EDIR: exome database of interspersed repeats'
  authors:
  - family-names: Ngoc
    given-names: Laura D T Vo
  - family-names: Osei
    given-names: Randy
  - family-names: Dohr
    given-names: Katrin
  - family-names: Olsen
    given-names: Catharina
  - family-names: Seneca
    given-names: Sara
  - family-names: Gheldof
    given-names: Alexander
  journal: Bioinformatics
  year: '2023'
  volume: '39'
  issue: '1'
  url: https://doi.org/10.1093/bioinformatics/btac771
  start: btac771
repository: https://bioc.r-universe.dev
contact:
- family-names: Vo Ngoc
  given-names: Laura D.T.
  email: doan.vongoc@vub.be
  orcid: https://orcid.org/0000-0002-1597-900X