Package: EBSeq 2.11.0
EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data
Differential Expression analysis at both gene and isoform level using RNA-seq data
Authors:
EBSeq_2.11.0.tar.gz
EBSeq_2.11.0.zip(r-4.7)EBSeq_2.11.0.zip(r-4.6)EBSeq_2.11.0.zip(r-4.5)
EBSeq_2.11.0.tgz(r-4.6-x86_64)EBSeq_2.11.0.tgz(r-4.6-arm64)EBSeq_2.11.0.tgz(r-4.5-x86_64)EBSeq_2.11.0.tgz(r-4.5-arm64)
EBSeq_2.11.0.tar.gz(r-4.7-arm64)EBSeq_2.11.0.tar.gz(r-4.7-x86_64)EBSeq_2.11.0.tar.gz(r-4.6-arm64)EBSeq_2.11.0.tar.gz(r-4.6-x86_64)
EBSeq_2.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
EBSeq/json (API)
| # Install 'EBSeq' in R: |
| install.packages('EBSeq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- GeneMat - The simulated data for two condition gene DE analysis
- IsoList - The simulated data for two condition isoform DE analysis
- IsoMultiList - The simulated data for multiple condition isoform DE analysis
- MultiGeneMat - The simulated data for multiple condition gene DE analysis
On BioConductor:EBSeq-2.11.0(bioc 3.24)EBSeq-2.10.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologystatisticalmethoddifferentialexpressionmultiplecomparisonrnaseqsequencingcpp
Last updated from:78a014dabd. Checks:1 ERROR, 11 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 166 | ||
| linux-devel-arm64 | WARNING | 174 | ||
| linux-devel-x86_64 | WARNING | 186 | ||
| source / vignettes | OK | 188 | ||
| linux-release-arm64 | WARNING | 194 | ||
| linux-release-x86_64 | WARNING | 181 | ||
| macos-release-arm64 | WARNING | 166 | ||
| macos-release-x86_64 | WARNING | 196 | ||
| macos-oldrel-arm64 | WARNING | 117 | ||
| macos-oldrel-x86_64 | WARNING | 296 | ||
| windows-devel | WARNING | 153 | ||
| windows-release | WARNING | 140 | ||
| windows-oldrel | WARNING | 159 | ||
| wasm-release | OK | 150 |
Exports:beta.momcrit_funDenNHistEBMultiTestEBSeqTestEBTestf0f1GetDEResultsGetMultiFCGetMultiPPGetNgGetNormalizedMatGetPatternsGetPPMatGetSelectedPatternsLikefunLikefunMultiLogNLogNMultiMedianNormPlotPatternPlotPostVsRawFCPolyFitPlotPostFCQQPQuantileNormRankNorm
Dependencies:BHbitopsblockmodelingbriocallrcaToolsclicrayondescdiffobjevaluatefsgluegplotsgtoolsjsonliteKernSmoothlatticelifecyclemagrittrMatrixotelpkgbuildpkgloadpraiseprocessxpsR6RcppRcppEigenrlangrprojroottestthatwaldowithr
