Package: DelayedTensor 1.13.0
Koki Tsuyuzaki
DelayedTensor: R package for sparse and out-of-core arithmetic and decomposition of Tensor
DelayedTensor operates Tensor arithmetic directly on DelayedArray object. DelayedTensor provides some generic function related to Tensor arithmetic/decompotision and dispatches it on the DelayedArray class. DelayedTensor also suppors Tensor contraction by einsum function, which is inspired by numpy einsum.
Authors:
DelayedTensor_1.13.0.tar.gz
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DelayedTensor.pdf |DelayedTensor.html✨
DelayedTensor/json (API)
NEWS
| # Install 'DelayedTensor' in R: |
| install.packages('DelayedTensor', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rikenbit/delayedtensor/issues
- human_mid_brain - Matrix object of human mid brain data
- mouse_mid_brain - Matrix object of mouse mid brain data
On BioConductor:DelayedTensor-1.11.1(bioc 3.20)DelayedTensor-1.10.0(bioc 3.19)
softwareinfrastructuredatarepresentationdimensionreduction
Last updated 23 days agofrom:35f745ff4a. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | WARNING | Oct 30 2024 |
| R-4.5-linux | WARNING | Oct 30 2024 |
| R-4.4-win | WARNING | Oct 30 2024 |
| R-4.4-mac | WARNING | Oct 30 2024 |
| R-4.3-win | WARNING | Oct 30 2024 |
| R-4.3-mac | WARNING | Oct 30 2024 |
Exports:cbind_listcpcs_foldcs_unfoldDelayedDiagonalArraydiagdiag<-einsumfnormfoldgetSparsegetVerbosehadamardhadamard_listhosvdinnerProdk_foldk_unfoldkhatri_raokhatri_rao_listkroneckerkronecker_listlist_repmatvecmodebind_listmodeMeanmodeSummpcaouterProdpvdrbind_listrs_foldrs_unfoldsetSparsesetVerbosettlttmtuckerunfoldunmatvecvec
Dependencies:abindassortheadbeachmatBHBiocGenericsBiocParallelBiocSingularcodetoolscpp11crayonDelayedArrayDelayedRandomArraydqrngeinsumformatRfutile.loggerfutile.optionsglueHDF5ArrayIRangesirlbalambda.rlatticemathjaxrMatrixMatrixGenericsmatrixStatsRcpprhdf5rhdf5filtersRhdf5librsvdrTensorS4ArraysS4VectorsScaledMatrixsitmosnowSparseArrayXVectorzlibbioc
Concept of DelayedTensor
Rendered fromDelayedTensor_1.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2021-06-24
Started: 2021-06-05
Einsum operation by DelayedTensor
Rendered fromDelayedTensor_4.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2021-06-24
Started: 2021-06-05
Tensor arithmetic by DelayedTensor
Rendered fromDelayedTensor_2.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2021-07-14
Started: 2021-06-05
Tensor decomposition by DelayedTensor
Rendered fromDelayedTensor_3.Rmdusingknitr::rmarkdownon Oct 30 2024.Last update: 2021-07-14
Started: 2021-06-05
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| R package for sparse and out-of-core arithmetic and decomposition of Tensor | DelayedTensor-package DelayedTensor |
| Mode-binding against list | cbind_list |
| Canonical Polyadic Decomposition | cp cp,DelayedArray-method cp-methods |
| Column Space Folding of 2D DelayedArray | cs_fold cs_fold,DelayedArray-method cs_fold-methods |
| Tensor Column Space Unfolding of DelayedArray | cs_unfold cs_unfold,DelayedArray-method cs_unfold-methods |
| Diagonal DelayedArray | DelayedDiagonalArray |
| DelayedArray Diagonals | diag diag,DelayedArray-method diag-methods diag<- diag<-,DelayedArray-method |
| Einstein Summation of DelayedArray | einsum |
| Tensor Frobenius Norm of DelayedArray | fnorm fnorm,DelayedArray-method fnorm-methods |
| Tensor folding of 2D DelayedArray | fold fold,DelayedArray-method fold-methods |
| Getter of the intermediate/output DelayedArray object in DelayedTensor | getSparse |
| Getter function to control the verbose messages from DelayedTensor | getVerbose |
| Hadamard Product against list | hadamard_list |
| Hadamard Product of DelayedArray | hadamard hadamard,DelayedArray,DelayedArray-method hadamard-methods |
| (Truncated-)Higher-order SVD | hosvd hosvd,DelayedArray-method hosvd-methods |
| Matrix object of human mid brain data | human_mid_brain |
| Tensors Inner Product of DelayedArray | innerProd innerProd,DelayedArray,DelayedArray-method innerProd-methods |
| k-mode Folding of 2D DelayedArray | k_fold k_fold,DelayedArray-method k_fold-methods |
| Tensor k-mode Unfolding of DelayedArray | k_unfold k_unfold,DelayedArray-method k_unfold-methods |
| Khatri-Rao Product against list | khatri_rao_list |
| Khatri-Rao Product of DelayedArray | khatri_rao khatri_rao,DelayedArray,DelayedArray-method khatri_rao-methods |
| Kronecker Product against list | kronecker_list |
| Kronecker Product of DelayedArray | kronecker kronecker,DelayedArray,DelayedArray-method kronecker-methods |
| Replicate of arbitrary object | list_rep |
| Tensor Matvec Unfolding of DelayedArray | matvec matvec,DelayedArray-method matvec-methods |
| Mode-binding against list | modebind_list |
| Tensor Mean Across Single Mode of DelayedArray | modeMean modeMean,DelayedArray-method modeMean-methods |
| Tensor Sum Across Single Mode of DelayedArray | modeSum modeSum,DelayedArray-method modeSum-methods |
| Matrix object of mouse mid brain data | mouse_mid_brain |
| Multilinear Principal Components Analysis | mpca mpca,DelayedArray-method mpca-methods |
| Tensors Outer Product of DelayedArray | outerProd outerProd,DelayedArray,DelayedArray-method outerProd-methods |
| Population Value Decomposition | pvd pvd,DelayedArray-method pvd-methods |
| Mode-binding against list | rbind_list |
| Row Space Folding of 2D DelayedArray | rs_fold rs_fold,DelayedArray-method rs_fold-methods |
| Tensor Row Space Unfolding of DelayedArray | rs_unfold rs_unfold,DelayedArray-method rs_unfold-methods |
| Setter to set the intermediate DelayedArray object in DelayedTensor | setSparse |
| Setter to set the verbose mode of DelayedTensor | setVerbose |
| DelayedArray Times List | ttl |
| Tensor Times Matrix (m-Mode Product) | ttm ttm,DelayedArray,DelayedArray-method ttm-methods |
| Tucker Decomposition | tucker tucker,DelayedArray-method tucker-methods |
| Tensor Unfolding of 2D DelayedArray | unfold unfold,DelayedArray-method unfold-methods |
| Unmatvec Folding of 2D DelayedArray | unmatvec unmatvec,DelayedArray-method unmatvec-methods |
| Tensor Vectorization of DelayedArray | vec vec,DelayedArray-method vec-methods |
