Package: DelayedMatrixStats 1.35.0
Peter Hickey
DelayedMatrixStats: Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.
Authors:
DelayedMatrixStats_1.35.0.tar.gz
DelayedMatrixStats_1.35.0.zip(r-4.7)DelayedMatrixStats_1.35.0.zip(r-4.6)DelayedMatrixStats_1.35.0.zip(r-4.5)
DelayedMatrixStats_1.35.0.tgz(r-4.6-any)DelayedMatrixStats_1.35.0.tgz(r-4.5-any)
DelayedMatrixStats_1.35.0.tar.gz(r-4.7-any)DelayedMatrixStats_1.35.0.tar.gz(r-4.6-any)
DelayedMatrixStats_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DelayedMatrixStats/json (API)
NEWS
| # Install 'DelayedMatrixStats' in R: |
| install.packages('DelayedMatrixStats', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/petehaitch/delayedmatrixstats/issues
On BioConductor:DelayedMatrixStats-1.35.0(bioc 3.24)DelayedMatrixStats-1.34.0(bioc 3.23)
infrastructuredatarepresentationsoftware
Last updated from:fd7d3fb8c0. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 206 | ||
| linux-devel-x86_64 | NOTE | 359 | ||
| source / vignettes | OK | 385 | ||
| linux-release-x86_64 | NOTE | 352 | ||
| macos-release-arm64 | NOTE | 350 | ||
| macos-oldrel-arm64 | NOTE | 218 | ||
| windows-devel | NOTE | 279 | ||
| windows-release | NOTE | 287 | ||
| windows-oldrel | NOTE | 280 | ||
| wasm-release | OK | 119 |
Exports:colAllscolAnyNAscolAnyscolAvgsPerRowSetcolCollapsecolCountscolCummaxscolCumminscolCumprodscolCumsumscolDiffscolIQRDiffscolIQRscolLogSumExpscolMadDiffscolMadscolMaxscolMeans2colMedianscolMinscolOrderStatscolProdscolQuantilescolRangescolRankscolSdDiffscolSdscolSums2colTabulatescolVarDiffscolVarscolWeightedMadscolWeightedMeanscolWeightedMedianscolWeightedSdscolWeightedVarsrowAllsrowAnyNAsrowAnysrowAvgsPerColSetrowCollapserowCountsrowCummaxsrowCumminsrowCumprodsrowCumsumsrowDiffsrowIQRDiffsrowIQRsrowLogSumExpsrowMadDiffsrowMadsrowMaxsrowMeans2rowMediansrowMinsrowOrderStatsrowProdsrowQuantilesrowRangesrowRanksrowSdDiffsrowSdsrowSums2rowTabulatesrowVarDiffsrowVarsrowWeightedMadsrowWeightedMeansrowWeightedMediansrowWeightedSdsrowWeightedVars
Dependencies:abindBiocGenericsDelayedArraygenericsIRangeslatticeMatrixMatrixGenericsmatrixStatsRcppS4ArraysS4VectorsSparseArraysparseMatrixStatsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check if all elements in a row (column) of a matrix-like object are equal to a value | colAlls,DelayedMatrix-method colAnys,DelayedMatrix-method rowAlls,DelayedMatrix-method rowAnys,DelayedMatrix-method |
| Check if any elements in a row (column) of a matrix-like object is missing | colAnyNAs,DelayedMatrix-method rowAnyNAs,DelayedMatrix-method |
| Calculates for each row (column) a summary statistic for equally sized subsets of columns (rows) | colAvgsPerRowSet,DelayedMatrix-method rowAvgsPerColSet,DelayedMatrix-method |
| Extract one cell from each row (column) of a matrix-like object | colCollapse,DelayedMatrix-method rowCollapse,DelayedMatrix-method |
| Count how often an element in a row (column) of a matrix-like object is equal to a value | colCounts,DelayedMatrix-method rowCounts,DelayedMatrix-method |
| Calculates the cumulative maxima for each row (column) of a matrix-like object | colCummaxs,DelayedMatrix-method colCummins,DelayedMatrix-method colCumprods,DelayedMatrix-method colCumsums,DelayedMatrix-method rowCummaxs,DelayedMatrix-method rowCummins,DelayedMatrix-method rowCumprods,DelayedMatrix-method rowCumsums,DelayedMatrix-method |
| Calculates the difference between each element of a row (column) of a matrix-like object | colDiffs,DelayedMatrix-method rowDiffs,DelayedMatrix-method |
| Calculates the interquartile range of the difference between each element of a row (column) of a matrix-like object | colIQRDiffs,DelayedMatrix-method colMadDiffs,DelayedMatrix-method colSdDiffs,DelayedMatrix-method colVarDiffs,DelayedMatrix-method rowIQRDiffs,DelayedMatrix-method rowMadDiffs,DelayedMatrix-method rowSdDiffs,DelayedMatrix-method rowVarDiffs,DelayedMatrix-method |
| Calculates the interquartile range for each row (column) of a matrix-like object | colIQRs,DelayedMatrix-method rowIQRs,DelayedMatrix-method |
| Accurately calculates the logarithm of the sum of exponentials for each row (column) of a matrix-like object | colLogSumExps,DelayedMatrix-method rowLogSumExps,DelayedMatrix-method |
| Calculates the median absolute deviation for each row (column) of a matrix-like object | colMads,DelayedMatrix-method colSds,DelayedMatrix-method rowMads,DelayedMatrix-method rowSds,DelayedMatrix-method |
| Calculates the mean for each row (column) of a matrix-like object | colMeans2,DelayedMatrix-method colMeans2,Matrix-method colMeans2,SolidRleArraySeed-method rowMeans2,DelayedMatrix-method rowMeans2,Matrix-method |
| Calculates the median for each row (column) of a matrix-like object | colMedians,DelayedMatrix-method rowMedians,DelayedMatrix-method |
| Calculates an order statistic for each row (column) of a matrix-like object | colOrderStats,DelayedMatrix-method rowOrderStats,DelayedMatrix-method |
| Calculates the product for each row (column) of a matrix-like object | colProds,DelayedMatrix-method colProds,SolidRleArraySeed-method rowProds,DelayedMatrix-method |
| Calculates quantiles for each row (column) of a matrix-like object | colQuantiles,DelayedMatrix-method rowQuantiles,DelayedMatrix-method |
| Calculates the rank of the elements for each row (column) of a matrix-like object | colRanks,DelayedMatrix-method rowRanks,DelayedMatrix-method |
| Calculates the sum for each row (column) of a matrix-like object | colSums2,DelayedMatrix-method colSums2,Matrix-method colSums2,SolidRleArraySeed-method rowSums2,DelayedMatrix-method rowSums2,Matrix-method |
| Tabulates the values in a matrix-like object by row (column) | colTabulates,DelayedMatrix-method rowTabulates,DelayedMatrix-method |
| Calculates the variance for each row (column) of a matrix-like object | colVars,DelayedMatrix-method rowVars,DelayedMatrix-method |
| Calculates the weighted median absolute deviation for each row (column) of a matrix-like object | colWeightedMads,DelayedMatrix-method rowWeightedMads,DelayedMatrix-method |
| Calculates the weighted mean for each row (column) of a matrix-like object | colWeightedMeans,DelayedMatrix-method rowWeightedMeans,DelayedMatrix-method |
| Calculates the weighted median for each row (column) of a matrix-like object | colWeightedMedians,DelayedMatrix-method rowWeightedMedians,DelayedMatrix-method |
| Calculates the weighted standard deviation for each row (column) of a matrix-like object | colWeightedSds,DelayedMatrix-method colWeightedVars,DelayedMatrix-method rowWeightedSds,DelayedMatrix-method rowWeightedVars,DelayedMatrix-method |
| 'subset_by_Nindex' | subset_by_Nindex |
