Remove colAnyMissings()
and rowAnyMissings()
, which were deprecated in Version 1.23 and made defunct in Version 1.25.
colAnyMissings()
and rowAnyMissings()
are defunct in favour of the long-recommended colAnyNAs()
and rowAnyNAs()
. These defunct functions will be removed in the next release cycle.
Scalar center argument for matrix functions are now defunct following similar change in matrixStats (https://github.com/HenrikBengtsson/matrixStats/issues/254).
colAnyMissings()
and rowAnyMissings()
are deprecated in favour of the long-recommended colAnyNAs()
and rowAnyNAs()
. These deprecated functions will be made defunct in the next release cycle.
Fix for missing na.rm=
argument in *AvgsPer*Set
functions.
DelayedMatrixStats no longer has a hard requirement on HDF5Array or BiocParallel.
Correct handling of drop=
by quantile functions (https://github.com/PeteHaitch/DelayedMatrixStats/pull/71).
Fix 2 issues with how the center
argument is handled (https://github.com/PeteHaitch/DelayedMatrixStats/pull/69).
Dispatch to sparseMatrixStats for sparse seeds that do not have their own methods (https://github.com/PeteHaitch/DelayedMatrixStats/pull/65).
Fix center=
handling for all affected functions (https://github.com/PeteHaitch/DelayedMatrixStats/pull/65).
DelayedMatrixStats now imports the generics from MatrixGenerics. Thanks to Aaron Lun resolving this (https://github.com/PeteHaitch/DelayedMatrixStats/pull/62).
Move rowsum()
and colsum()
to DelayedArray package (https://github.com/PeteHaitch/DelayedMatrixStats/pull/56).
Fix bug in rowsum()
reported by @MalteThodberg (https://github.com/PeteHaitch/DelayedMatrixStats/issues/54).
Add rowsum()
(based on base::rowsum()
) and colsum()
(not found in base R or matrixStats).
Sync API with matrixStats v0.53.1
.
Add explicit arguments to col-/rowSds()
.
Fix dimnames for col-/rowQuantiles()
.
Sync documentation with matrixStats v0.53.1
.
Add colWeightedSds()
, colWeightedVars()
, rowWeightedSds()
, and rowWeightedVars()
.
Add colAvgsPerRowSet()
.
Defunct argument centers
for colMads()
/rowMads()
as of matrixStats v0.53.0
.
Sync documentation with matrixStats v0.53.0
.
Fix typos in vignette.
Allow vignette code chunks to error if they use functions from profmem (these only work if R was configured with support for memory-profiling, which isn't enabled on Bioconductor's malbec1 Linux machine).
Update API table in README and vignette.
Develop against the current CRAN release of matrixStats instead of devel version.
Remove colAvgsPerRowSet()
until next CRAN release of matrixStats (https://github.com/HenrikBengtsson/matrixStats/issues/110).
Initial submission to Bioconductor.