Package: DeepTarget 1.1.0
DeepTarget: Deep characterization of cancer drugs
This package predicts a drug’s primary target(s) or secondary target(s) by integrating large-scale genetic and drug screens from the Cancer Dependency Map project run by the Broad Institute. It further investigates whether the drug specifically targets the wild-type or mutated target forms. To show how to use this package in practice, we provided sample data along with step-by-step example.
Authors:
DeepTarget_1.1.0.tar.gz
DeepTarget_1.1.0.zip(r-4.5)DeepTarget_1.1.0.zip(r-4.4)
DeepTarget_1.1.0.tgz(r-4.4-any)
DeepTarget_1.1.0.tar.gz(r-4.5-noble)DeepTarget_1.1.0.tar.gz(r-4.4-noble)
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DeepTarget.pdf |DeepTarget.html✨
DeepTarget/json (API)
NEWS
# Install 'DeepTarget' in R: |
install.packages('DeepTarget', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- OntargetM - An object containing a small part of the data from the Cancer Dependency Map (depmap.org) to demonstrate in DeepTarget pipeline
On BioConductor:DeepTarget-1.1.0(bioc 3.21)DeepTarget-1.0.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
genetargetgenepredictionpathwaysgeneexpressionrnaseqimmunooncologydifferentialexpressiongenesetenrichmentreportwritingcrispr
Last updated 2 months agofrom:3398b5df86. Checks:OK: 1 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 29 2024 |
R-4.5-win | NOTE | Nov 29 2024 |
R-4.5-linux | NOTE | Nov 29 2024 |
R-4.4-win | NOTE | Nov 29 2024 |
R-4.4-mac | NOTE | Nov 29 2024 |
Exports:computeCorDepmap2DeepTargetDMBDoInteractExpDoInteractMutantDoPWYDTRplotCorplotSimPredMaxSimPredTarget
Dependencies:abindAnnotationDbiAnnotationHubaskpassbackportsBHBiobaseBiocFileCacheBiocGenericsBiocManagerBiocParallelBiocVersionBiostringsbitbit64blobbootbroomcachemcarcarDataclicliprcodetoolscolorspacecorrplotcowplotcpp11crayoncurldata.tableDBIdbplyrdepmapDerivdoBydplyrExperimentHubfansifarverfastmapfastmatchfgseafilelockformatRFormulafutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehmshttrhttr2IRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplogrplyrpngpolynomprettyunitspROCprogresspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadrrlangRSQLiterstatixS4VectorsscalessnowSparseMstringistringrsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXVectoryamlzlibbioc