Package: DTA 2.53.0
Bjoern Schwalb
DTA: Dynamic Transcriptome Analysis
Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.
Authors:
DTA_2.53.0.tar.gz
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DTA.pdf |DTA.html✨
DTA/json (API)
| # Install 'DTA' in R: |
| install.packages('DTA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Dm.tnumber - The amount of thymines in the cDNA of each transcript of Drosophila Melanogaster.
- Hs.datamat - Gene expression profiles of the Homo Sapiens DTA experiment from Doelken et al.
- Hs.enst2ensg - Mapping of Homo Sapiens gene and transcript identifiers.
- Hs.phenomat - Design of the Homo Sapiens DTA experiment from Doelken et al.
- Hs.reliable - Gene identifiers valid for parameter estimation from the Homo Sapiens Doelken et al. DTA experiment.
- Hs.tnumber - The amount of thymines in the cDNA of each transcript of Homo Sapiens.
- Hs.tnumber - The amount of thymines in the cDNA of each transcript of Homo Sapiens.
- Mm.datamat - Gene expression profiles of the Mus Musculus DTA experiment from Doelken et al.
- Mm.enst2ensg - Mapping of Mus Musculus gene and transcript identifiers.
- Mm.phenomat - Design of the Mus Musculus DTA experiment from Doelken et al.
- Mm.reliable - Gene identifiers valid for parameter estimation from the Mus Musculus Doelken et al. DTA experiment.
- Mm.tnumber - The amount of thymines in the cDNA of each transcript of Mus Musculus.
- Mm.tnumber - The amount of thymines in the cDNA of each transcript of Mus Musculus.
- Pol.phenomat - Design of the Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) cDTA experiment from Sun et al.
- Raw.datamat - Gene expression profiles of the Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and wild-type cDTA experiment from Sun et al.
- Sc.affy2ensg - Mapping of SaccharomycesCerevisiae Affymetrix Yeast 2.0 and gene identifiers.
- Sc.datamat - Gene expression profiles of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al.
- Sc.datamat.dynamic - Gene expression profiles of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.
- Sc.ensg.reliable - Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Sun et al. cDTA experiment.
- Sc.phenomat - Design of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al.
- Sc.phenomat.dynamic - Design of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.
- Sc.reliable - Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Miller et al. wild-type DTA experiment.
- Sc.reliable.dynamic - Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Miller et al. salt stress DTA experiment.
- Sc.ribig.ensg - Ribosome biogenesis genes.
- Sc.rpg.ensg - Ribosomal protein genes.
- Sc.stress.ensg - ISA stress module.
- Sc.tf.ensg - Transcription factors.
- Sc.tnumber - The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
- Sc.tnumber - The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
- Sc.tnumber - The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
- Sc.tnumber - The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
- Sp.affy.reliable - Gene identifiers valid for cDTA normalization from the Saccharomyces Cerevisiae Sun et al. cDTA experiment.
- Sp.tnumber - The amount of thymines in the cDNA of each transcript of Schizosaccharomyces Pombe.
- Wt.phenomat - Design of the Saccharomyces Cerevisiae wild-type cDTA experiment from Sun et al.
On BioConductor:DTA-2.53.0(bioc 3.21)DTA-2.52.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpressiongeneexpressiontranscription
Last updated 2 months agofrom:3ccd65fd2a. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-win | NOTE | Dec 19 2024 |
| R-4.5-linux | NOTE | Dec 19 2024 |
| R-4.4-win | NOTE | Dec 19 2024 |
| R-4.4-mac | NOTE | Dec 19 2024 |
| R-4.3-win | NOTE | Dec 19 2024 |
| R-4.3-mac | NOTE | Dec 19 2024 |
Exports:DTA.dynamic.estimateDTA.dynamic.generateDTA.estimateDTA.generateDTA.map.itDTA.normalizeDTA.phenomatDTA.plot.ittls
Dependencies:LSDscatterplot3d
