Package: DNAZooData 1.13.0

Jacques Serizay

DNAZooData: DNA Zoo data package

DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium](https://www.dnazoo.org/). The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.

Authors:Jacques Serizay [aut, cre]

DNAZooData_1.13.0.tar.gz
DNAZooData_1.13.0.tar.gz(r-4.7-any)DNAZooData_1.13.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DNAZooData/json (API)

# Install 'DNAZooData' in R:

install.packages('DNAZooData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/js2264/dnazoodata/issues

On BioConductor:DNAZooData-1.13.0(data/experiment 3.24)DNAZooData-1.12.0(data/experiment 3.23)

experimentdata sequencingdata datapkg

4.86 score 2 stars 1 packages 12 scripts 2 exports 78 dependencies

Last updated from:fc17f13f22. Checks:1 NOTE, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	181
linux-devel	OK	359
source / vignettes	OK	422
linux-release	OK	339

Exports:DNAZooData DNAZooDataCache

Dependencies:abind askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO biocmake BiocParallel bit bit64 blob cachem cli codetools cpp11 crayon curl DBI dbplyr DelayedArray dir.expiry dplyr fastmap filelock formatR futile.logger futile.options generics GenomicRanges glue HiCExperiment hms httr2 InteractionSet IRanges lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise openssl pillar pkgconfig prettyunits progress purrr R6 Rcpp rhdf5 rhdf5filters Rhdf5lib rjson rlang RSQLite S4Arrays S4Vectors Seqinfo snow SparseArray strawr stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tzdb utf8 vctrs vroom withr XVector

DNAZooData

Introduction | Installation | HiCExperiment and DNAZooData | Session info

Rendered fromDNAZooData.Rmdusingknitr::rmarkdown

Last update: 2023-02-09
Started: 2023-02-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
DNAZooData	DNAZooData
Manage cache / download files from the DNAZoo data portal	DNAZooDataCache