DMRsegaldata: Example DNAm Data for DMRsegal

Package: DMRsegaldata 1.1.0

Vasileios Lemonidis

DMRsegaldata: Example DNAm Data for DMRsegal

Data package providing example DNA methylation files used in the DMRsegal vignette and examples. Includes a sorted beta matrix as a tab-delimited, bgzip-compressed file and a matching phenotype table. The data contains 10 healthy and 10 cancer samples, and preprocessing has already been performed on the beta values.

Authors:Vasileios Lemonidis [aut, cre, cph], Center for Oncological Research, University of Antwerp [cph, fnd], Stichting Tegen Kanker [fnd]

DMRsegaldata_1.1.0.tar.gz
DMRsegaldata_1.1.0.tar.gz(r-4.7-any)DMRsegaldata_1.1.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DMRsegaldata/json (API)

# Install 'DMRsegaldata' in R:

install.packages('DMRsegaldata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:DMRsegaldata-1.1.0(data/experiment 3.24)DMRsegaldata-1.0.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimenthub experimentdata snpdata sequencingdata microarraydata genome datapkg

3.90 score 0 exports 57 dependencies

Last updated from:ce339a58aa. Checks:1 NOTE, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	139
linux-devel	OK	247
source / vignettes	OK	378
linux-release	OK	232

Exports:

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Introduction to DMRsegaldata

Rendered fromDMRsegaldata.Rmdusingknitr::rmarkdown

Help page	Topics
Example DNA Methylation Data for DMRsegal	DMRsegaldata-package DMRsegaldata
Methylation Array Type	array_type
DNA Methylation Beta Values Matrix	beta
Differentially Methylated Positions (DMPs)	dmps
Phenotype Data for DNA Methylation Samples	pheno

Help page

Topics

Example DNA Methylation Data for DMRsegal

DMRsegaldata-package DMRsegaldata

Methylation Array Type

array_type

DNA Methylation Beta Values Matrix

beta

Differentially Methylated Positions (DMPs)

dmps

Phenotype Data for DNA Methylation Samples

pheno