Package: DEGseq 1.67.0
Likun Wang
DEGseq: Identify Differentially Expressed Genes from RNA-seq data
DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.
Authors:
DEGseq_1.67.0.tar.gz
DEGseq_1.67.0.zip(r-4.7)DEGseq_1.67.0.zip(r-4.6)DEGseq_1.67.0.zip(r-4.5)
DEGseq_1.67.0.tgz(r-4.6-x86_64)DEGseq_1.67.0.tgz(r-4.6-arm64)DEGseq_1.67.0.tgz(r-4.5-x86_64)DEGseq_1.67.0.tgz(r-4.5-arm64)
DEGseq_1.67.0.tar.gz(r-4.7-arm64)DEGseq_1.67.0.tar.gz(r-4.7-x86_64)DEGseq_1.67.0.tar.gz(r-4.6-arm64)DEGseq_1.67.0.tar.gz(r-4.6-x86_64)
DEGseq_1.67.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DEGseq/json (API)
NEWS
| # Install 'DEGseq' in R: |
| install.packages('DEGseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:DEGseq-1.67.0(bioc 3.24)DEGseq-1.66.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
rnaseqpreprocessinggeneexpressiondifferentialexpressionimmunooncologycpp
Last updated from:89d9ba88d8. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 148 | ||
| linux-devel-arm64 | NOTE | 130 | ||
| linux-devel-x86_64 | NOTE | 169 | ||
| source / vignettes | OK | 197 | ||
| linux-release-arm64 | NOTE | 152 | ||
| linux-release-x86_64 | NOTE | 202 | ||
| macos-release-arm64 | WARNING | 122 | ||
| macos-release-x86_64 | WARNING | 189 | ||
| macos-oldrel-arm64 | WARNING | 95 | ||
| macos-oldrel-x86_64 | WARNING | 194 | ||
| windows-devel | NOTE | 106 | ||
| windows-release | NOTE | 96 | ||
| windows-oldrel | NOTE | 112 | ||
| wasm-release | OK | 102 |
Exports:DEGexpDEGexp2DEGseqgetGeneExpreadGeneExp
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrqvalueR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| DEGexp: Identifying Differentially Expressed Genes from gene expression data | DEGexp |
| DEGexp2: Identifying Differentially Expressed Genes from gene expression data | DEGexp2 |
| DEGseq: Identify Differentially Expressed Genes from RNA-seq data | DEGseq |
| GeneExpExample1000 | GeneExpExample1000 |
| GeneExpExample5000 | GeneExpExample5000 |
| getGeneExp: Count the number of reads and calculate the RPKM for each gene | getGeneExp |
| kidneyChr21.bed | kidneyChr21.bed |
| kidneyChr21Bowtie | kidneyChr21Bowtie |
| liverChr21.bed | liverChr21.bed |
| liverChr21Bowtie | liverChr21Bowtie |
| readGeneExp: read gene expression values to a matrix | readGeneExp |
| refFlatChr21 | refFlatChr21 |
