Package: DEGseq 1.61.0
Likun Wang
DEGseq: Identify Differentially Expressed Genes from RNA-seq data
DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.
Authors:
DEGseq_1.61.0.tar.gz
DEGseq_1.61.0.zip(r-4.5)DEGseq_1.61.0.zip(r-4.4)DEGseq_1.61.0.zip(r-4.3)
DEGseq_1.61.0.tgz(r-4.4-x86_64)DEGseq_1.61.0.tgz(r-4.4-arm64)DEGseq_1.61.0.tgz(r-4.3-x86_64)DEGseq_1.61.0.tgz(r-4.3-arm64)
DEGseq_1.61.0.tar.gz(r-4.5-noble)DEGseq_1.61.0.tar.gz(r-4.4-noble)
DEGseq_1.61.0.tgz(r-4.4-emscripten)DEGseq_1.61.0.tgz(r-4.3-emscripten)
DEGseq.pdf |DEGseq.html✨
DEGseq/json (API)
NEWS
| # Install 'DEGseq' in R: |
| install.packages('DEGseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:DEGseq-1.61.0(bioc 3.21)DEGseq-1.60.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
rnaseqpreprocessinggeneexpressiondifferentialexpressionimmunooncologycpp
Last updated 2 months agofrom:8770bb20fb. Checks:OK: 1 NOTE: 4 WARNING: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 28 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 28 2024 |
| R-4.5-linux-x86_64 | NOTE | Nov 28 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 28 2024 |
| R-4.4-mac-x86_64 | WARNING | Nov 28 2024 |
| R-4.4-mac-aarch64 | WARNING | Nov 28 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 28 2024 |
| R-4.3-mac-x86_64 | WARNING | Nov 28 2024 |
| R-4.3-mac-aarch64 | WARNING | Nov 28 2024 |
Exports:DEGexpDEGexp2DEGseqgetGeneExpreadGeneExp
Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrqvalueR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| DEGexp: Identifying Differentially Expressed Genes from gene expression data | DEGexp |
| DEGexp2: Identifying Differentially Expressed Genes from gene expression data | DEGexp2 |
| DEGseq: Identify Differentially Expressed Genes from RNA-seq data | DEGseq |
| GeneExpExample1000 | GeneExpExample1000 |
| GeneExpExample5000 | GeneExpExample5000 |
| getGeneExp: Count the number of reads and calculate the RPKM for each gene | getGeneExp |
| kidneyChr21.bed | kidneyChr21.bed |
| kidneyChr21Bowtie | kidneyChr21Bowtie |
| liverChr21.bed | liverChr21.bed |
| liverChr21Bowtie | liverChr21Bowtie |
| readGeneExp: read gene expression values to a matrix | readGeneExp |
| refFlatChr21 | refFlatChr21 |
