Package: DEFormats 1.33.0
Andrzej Oleś
DEFormats: Differential gene expression data formats converter
Convert between different data formats used by differential gene expression analysis tools.
Authors:
DEFormats_1.33.0.tar.gz
DEFormats_1.33.0.zip(r-4.5)DEFormats_1.33.0.zip(r-4.4)DEFormats_1.33.0.zip(r-4.3)
DEFormats_1.33.0.tgz(r-4.4-any)DEFormats_1.33.0.tgz(r-4.3-any)
DEFormats_1.33.0.tar.gz(r-4.5-noble)DEFormats_1.33.0.tar.gz(r-4.4-noble)
DEFormats_1.33.0.tgz(r-4.4-emscripten)DEFormats_1.33.0.tgz(r-4.3-emscripten)
DEFormats.pdf |DEFormats.html✨
DEFormats/json (API)
NEWS
| # Install 'DEFormats' in R: |
| install.packages('DEFormats', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aoles/deformats/issues
On BioConductor:DEFormats-1.33.0(bioc 3.20)DEFormats-1.32.0(bioc 3.19)
Last updated 2 months agofrom:4813632c8f
Exports:as.DESeqDataSetas.DGEListDGEListsimulateNormFactorssimulateRnaSeqData
Dependencies:abindaskpassbackportsBHBiobaseBiocGenericsBiocParallelcheckmateclicodetoolscolorspacecpp11crayoncurldata.tableDelayedArrayDESeq2edgeRfansifarverformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigR6RColorBrewerRcppRcppArmadillorlangS4ArraysS4VectorsscalessnowSparseArraystatmodSummarizedExperimentsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert to DESeqDataSet | as.DESeqDataSet as.DESeqDataSet.DGEList |
| Convert to DGEList | as.DGEList as.DGEList.DESeqDataSet |
| Convert Between Differential Gene Expression Data Formats | DEFormats |
| DGEList Constructor Generic | DGEList DGEList,RangedSummarizedExperiment-method |
| Simulate Normalization Factors | simulateNormFactors |
| Example counts table of RNA-seq data | simulateRnaSeqData |
