Session info
Package: DAPARdata 1.43.0
Samuel Wieczorek
DAPARdata: Data accompanying the DAPAR and Prostar packages
Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.
Authors:
DAPARdata_1.43.0.tar.gz
DAPARdata_1.43.0.tar.gz(r-4.7-any)DAPARdata_1.43.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DAPARdata/json (API)
| # Install 'DAPARdata' in R: |
| install.packages('DAPARdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/edyp-lab/dapardata/issues
Datasets:
- Exp1_R2_pept - Exp1_R2_pept dataset
- Exp1_R2_prot - Exp1_R2_prot dataset
- Exp1_R25_pept - Exp1_R25_pept dataset
- Exp1_R25_prot - Exp1_R25_prot dataset
- Exp2_R10_pept - Exp2_R10_pept dataset
- Exp2_R10_prot - Exp2_R10_prot dataset
- Exp2_R100_pept - Exp2_R100_pept dataset
- Exp2_R100_prot - Exp2_R100_prot dataset
- Exp2_R2_pept - Exp2_R2_pept dataset
- Exp2_R2_prot - Exp2_R2_prot dataset
On BioConductor:DAPARdata-1.43.0(data/experiment 3.24)DAPARdata-1.42.0(data/experiment 3.23)
experimentdatamassspectrometrydataproteomeprostar1datapkg
Last updated from:9431c2440e. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 186 | ||
| linux-devel | NOTE | 460 | ||
| source / vignettes | OK | 345 | ||
| linux-release | NOTE | 407 |
Exports:DAPARdata
Dependencies:abindaffyaffyioAnnotationFilteraskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocManagerBiocParallelbslibcachemcliclueclustercodetoolscpp11crosstalkcurldata.tableDelayedArraydigestdir.expirydoParalleldplyrevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMSnbaseMultiAssayExperimentmzIDmzRncdf4opensslotelpcaMethodspillarpkgconfigplotlyplyrpreprocessCorepromisesProtGenericsPSMatchPTModspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitevsnwithrxfunXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Lists the datasets embebbedin DAPARdata | DAPARdata |
| Exp1_R2_pept dataset | Exp1_R2_pept |
| Exp1_R2_prot dataset | Exp1_R2_prot |
| Exp1_R25_pept dataset | Exp1_R25_pept |
| Exp1_R25_prot dataset | Exp1_R25_prot |
| Exp2_R10_pept dataset | Exp2_R10_pept |
| Exp2_R10_prot dataset | Exp2_R10_prot |
| Exp2_R100_pept dataset | Exp2_R100_pept |
| Exp2_R100_prot dataset | Exp2_R100_prot |
| Exp2_R2_pept dataset | Exp2_R2_pept |
| Exp2_R2_prot dataset | Exp2_R2_prot |