Package: CyTOFpower 1.13.1

Anne-Maud Ferreira

CyTOFpower: Power analysis for CyTOF experiments

This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.

Authors:Anne-Maud Ferreira [cre, aut], Catherine Blish [aut], Susan Holmes [aut]

CyTOFpower_1.13.1.tar.gz
CyTOFpower_1.13.1.zip(r-4.5)CyTOFpower_1.13.1.zip(r-4.4)CyTOFpower_1.13.1.zip(r-4.3)
CyTOFpower_1.13.1.tgz(r-4.5-any)CyTOFpower_1.13.1.tgz(r-4.4-any)CyTOFpower_1.13.1.tgz(r-4.3-any)
CyTOFpower_1.13.1.tar.gz(r-4.5-noble)CyTOFpower_1.13.1.tar.gz(r-4.4-noble)
CyTOFpower_1.13.0.tgz(r-4.4-emscripten)CyTOFpower_1.13.0.tgz(r-4.3-emscripten)
CyTOFpower.pdf |CyTOFpower.html✨
CyTOFpower/json (API)
NEWS

# Install 'CyTOFpower' in R:
install.packages('CyTOFpower', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:CyTOFpower-1.13.0(bioc 3.21)CyTOFpower-1.12.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

flowcytometrysinglecellcellbiologystatisticalmethodsoftware

4.18 score 2 scripts 107 downloads 1 exports 225 dependencies

Last updated 17 days agofrom:c85b4db899. Checks:3 OK, 6 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 16 2025
R-4.5-winERRORMar 16 2025
R-4.5-macERRORMar 16 2025
R-4.5-linuxOKMar 16 2025
R-4.4-winERRORMar 16 2025
R-4.4-macERRORMar 16 2025
R-4.4-linuxOKMar 16 2025
R-4.3-winERRORMar 16 2025
R-4.3-macERRORMar 16 2025

Exports:CyTOFpower

Dependencies:abindALLaskpassbackportsbase64encBHbigmemorybigmemory.sriBiobaseBiocGenericsBiocParallelbootbroombslibcachemcarcarDatacaretcirclizeclasscliclockclueclustercodetoolscolorRampscolorspacecommonmarkComplexHeatmapConsensusClusterPluscorrplotcowplotcpp11crayoncrosstalkcurlCytoGLMMcytolibdata.tableDelayedArraydendextendDerivdiagramdiffcytdigestdoBydoParalleldplyrDTe1071edgeRellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustflexmixflowCoreFlowSOMfontawesomeforeachformatRFormulafsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggforceggnewscaleggplot2ggpubrggrepelggsciggsignifGlobalOptionsglobalsgluegowergridExtragtablehardhathighrhtmltoolshtmlwidgetshttpuvhttrigraphipredIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelavalazyevalleapslifecyclelimmalistenvlme4locfitlogginglubridatemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmbestmemoisemgcvmicrobenchmarkmimeminqaModelMetricsmodelrmodeltoolsmultcompmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslparallellypbkrtestpheatmappillarpkgconfigplyrpngpolyclippolynompROCprodlimprogressrpromisesproxypurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackrecipesreformulasreshape2Rhdf5librjsonrlangrmarkdownrpartRProtoBufLibrstatixRtsneS4ArraysS4Vectorssandwichsassscalesscatterplot3dshapeshinyshinyFeedbackshinyjsshinyMatrixsnowsourcetoolsSparseArraySparseMsparsevctrsSQUAREMstatmodstringistringrstrucchangeSummarizedExperimentsurvivalsyssystemfontsTH.datatibbletidyrtidyselecttimechangetimeDatetinytextweenrtzdbUCSC.utilsutf8uuidvctrsviridisviridisLitewithrxfunXMLxtableXVectoryamlzoo

Power analysis for CyTOF experiments

Anne-Maud Ferreira

Rendered fromCyTOFpower.Rmdusingknitr::rmarkdownon Mar 16 2025.

Last update: 2021-10-18
Started: 2021-09-24