Package: CyTOFpower 1.13.0

Anne-Maud Ferreira

CyTOFpower: Power analysis for CyTOF experiments

This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.

Authors:Anne-Maud Ferreira [cre, aut], Catherine Blish [aut], Susan Holmes [aut]

CyTOFpower_1.13.0.tar.gz
CyTOFpower_1.13.0.zip(r-4.5)CyTOFpower_1.13.0.zip(r-4.4)CyTOFpower_1.13.0.zip(r-4.3)
CyTOFpower_1.11.0.tgz(r-4.4-any)CyTOFpower_1.11.0.tgz(r-4.3-any)
CyTOFpower_1.13.0.tar.gz(r-4.5-noble)CyTOFpower_1.13.0.tar.gz(r-4.4-noble)
CyTOFpower_1.13.0.tgz(r-4.4-emscripten)CyTOFpower_1.13.0.tgz(r-4.3-emscripten)
CyTOFpower.pdf |CyTOFpower.html✨
CyTOFpower/json (API)
NEWS

# Install 'CyTOFpower' in R:
install.packages('CyTOFpower', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:CyTOFpower-1.13.0(bioc 3.21)CyTOFpower-1.12.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

flowcytometrysinglecellcellbiologystatisticalmethodsoftware

4.00 score 2 scripts 122 downloads 1 exports 222 dependencies

Last updated 2 months agofrom:46f9bddb03. Checks:OK: 4 ERROR: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winERRORDec 01 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winERRORDec 01 2024
R-4.4-macOKOct 09 2024
R-4.3-winOKNov 29 2024
R-4.3-macERROROct 09 2024

Exports:CyTOFpower

Dependencies:abindALLaskpassbackportsbase64encBHbigmemorybigmemory.sriBiobaseBiocGenericsBiocParallelbootbroombslibcachemcarcarDatacaretcirclizeclasscliclockclueclustercodetoolscolorRampscolorspacecommonmarkComplexHeatmapConsensusClusterPluscorrplotcowplotcpp11crayoncrosstalkcurlCytoGLMMcytolibdata.tableDelayedArraydendextendDerivdiagramdiffcytdigestdoBydoParalleldplyrDTe1071edgeRellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustflexmixflowCoreFlowSOMfontawesomeforeachformatRFormulafsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggforceggnewscaleggplot2ggpubrggrepelggsciggsignifGlobalOptionsglobalsgluegowergridExtragtablehardhathighrhtmltoolshtmlwidgetshttpuvhttrigraphipredIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelavalazyevalleapslifecyclelimmalistenvlme4locfitlogginglubridatemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmbestmemoisemgcvmicrobenchmarkmimeminqaModelMetricsmodelrmodeltoolsmultcompmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslparallellypbkrtestpheatmappillarpkgconfigplyrpngpolyclippolynompROCprodlimprogressrpromisesproxypurrrquantregR6rappdirsRColorBrewerRcppRcppEigenrecipesreshape2Rhdf5librjsonrlangrmarkdownrpartRProtoBufLibrstatixRtsneS4ArraysS4Vectorssandwichsassscalesscatterplot3dshapeshinyshinyFeedbackshinyjsshinyMatrixsnowsourcetoolsSparseArraySparseMSQUAREMstatmodstringistringrstrucchangeSummarizedExperimentsurvivalsyssystemfontsTH.datatibbletidyrtidyselecttimechangetimeDatetinytextweenrtzdbUCSC.utilsutf8uuidvctrsviridisviridisLitewithrxfunXMLxtableXVectoryamlzlibbioczoo

Power analysis for CyTOF experiments

Anne-Maud Ferreira

Rendered fromCyTOFpower.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2021-10-18
Started: 2021-09-24