{
  "_id": "6a103accacfb0bcc41c9b49a",
  "Package": "CyTOFpower",
  "Type": "Package",
  "Title": "Power analysis for CyTOF experiments",
  "Version": "1.19.1",
  "Authors@R": "c(person(\"Anne-Maud\", \"Ferreira\",\nemail = \"anne-maud.ferreira@epfedu.fr\",\nrole = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-4749-746X\")),\nperson(\"Catherine\", \"Blish\",\nemail = \"cblish@stanford.edu\",\nrole = c(\"aut\")),\nperson(\"Susan\", \"Holmes\",\nemail = \"sph@stanford.edu\",\nrole = c(\"aut\")))",
  "Description": "This package is a tool to predict the power of CyTOF\nexperiments in the context of differential state analyses. The\npackage provides a shiny app with two options to predict the\npower of an experiment: i. generation of in-sicilico CyTOF\ndata, using users input ii. browsing in a grid of parameters\nfor which the power was already precomputed.",
  "biocViews": "FlowCytometry, SingleCell, CellBiology, StatisticalMethod,\nSoftware",
  "License": "LGPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev\nlibssl-dev perl zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-02 23:33:22 UTC",
  "RemoteUrl": "https://github.com/bioc/CyTOFpower",
  "RemoteRef": "HEAD",
  "RemoteSha": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-11 22:08:47 UTC",
    "User": "root"
  },
  "Author": "Anne-Maud Ferreira [cre, aut] (ORCID:\n<https://orcid.org/0000-0002-4749-746X>),\nCatherine Blish [aut],\nSusan Holmes [aut]",
  "Maintainer": "Anne-Maud Ferreira <anne-maud.ferreira@epfedu.fr>",
  "MD5sum": "6b7ec2ab3b6afdac03ed493e6b3316e8",
  "_user": "bioc",
  "_type": "src",
  "_file": "CyTOFpower_1.19.1.tar.gz",
  "_fileid": "dca28dff100bf7e9fbba9a3d9f43b84a68629e4f6424b6fa037f4712a3835e6e",
  "_filesize": 176004,
  "_sha256": "dca28dff100bf7e9fbba9a3d9f43b84a68629e4f6424b6fa037f4712a3835e6e",
  "_created": "2026-05-11T22:08:47.000Z",
  "_published": "2026-05-22T11:15:24.262Z",
  "_jobs": [
    {
      "job": 77368416271,
      "time": 201,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "6931082003"
    },
    {
      "job": 77368416298,
      "time": 252,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6931095939"
    },
    {
      "job": 77368415997,
      "time": 297,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6931107623"
    },
    {
      "job": 77368416491,
      "time": 154,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6931067303"
    },
    {
      "job": 77368416243,
      "time": 178,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6931073720"
    },
    {
      "job": 77368415329,
      "time": 278,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6931025494"
    },
    {
      "job": 77368415285,
      "time": 178,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7159164490"
    },
    {
      "job": 77368416030,
      "time": 289,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6931104485"
    },
    {
      "job": 77368416619,
      "time": 140,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6931063670"
    },
    {
      "job": 77368416232,
      "time": 137,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6931062824"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 9
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/CyTOFpower",
  "_commit": {
    "id": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
    "author": "Anne-Maud Ferreira <anne-maud.ferreira@epfedu.fr>",
    "committer": "Anne-Maud Ferreira <anne-maud.ferreira@epfedu.fr>",
    "message": "Merge upstream/devel: resolve version conflict\n",
    "time": 1777764802
  },
  "_maintainer": {
    "name": "Anne-Maud Ferreira",
    "email": "anne-maud.ferreira@epfedu.fr",
    "login": "ferreiraam",
    "uuid": 55205274,
    "orcid": "0000-0002-4749-746X"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "CytoGLMM",
      "role": "Imports"
    },
    {
      "package": "diffcyt",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinyFeedback",
      "role": "Imports"
    },
    {
      "package": "shinyjs",
      "role": "Imports"
    },
    {
      "package": "shinyMatrix",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 11
    },
    {
      "week": "2026-18",
      "n": 3
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.19.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.17.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "flowcytometry",
    "singlecell",
    "cellbiology",
    "statisticalmethod",
    "software"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 144,
    "source": "https://www.bioconductor.org/packages/stats/bioc/CyTOFpower"
  },
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/CyTOFpower.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "CyTOFpower"
  ],
  "_help": [
    {
      "page": "CyTOFpower",
      "title": "CyTOFpower: R-package to predict the power of a CyTOF experiment",
      "topics": [
        "CyTOFpower"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/CyTOFpower/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "ALL",
    "backports",
    "base64enc",
    "BH",
    "bigmemory",
    "bigmemory.sri",
    "Biobase",
    "BiocGenerics",
    "biocmake",
    "BiocParallel",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "car",
    "carData",
    "caret",
    "circlize",
    "class",
    "cli",
    "clock",
    "clue",
    "cluster",
    "codetools",
    "colorRamps",
    "colorspace",
    "commonmark",
    "ComplexHeatmap",
    "ConsensusClusterPlus",
    "corrplot",
    "cowplot",
    "cpp11",
    "crayon",
    "crosstalk",
    "CytoGLMM",
    "cytolib",
    "data.table",
    "DelayedArray",
    "dendextend",
    "Deriv",
    "diagram",
    "diffcyt",
    "digest",
    "dir.expiry",
    "doBy",
    "doParallel",
    "dplyr",
    "DT",
    "e1071",
    "edgeR",
    "ellipse",
    "emmeans",
    "estimability",
    "evaluate",
    "factoextra",
    "FactoMineR",
    "farver",
    "fastmap",
    "filelock",
    "flashClust",
    "flexmix",
    "flowCore",
    "FlowSOM",
    "fontawesome",
    "foreach",
    "forecast",
    "formatR",
    "Formula",
    "fracdiff",
    "fs",
    "futile.logger",
    "futile.options",
    "future",
    "future.apply",
    "generics",
    "GenomicRanges",
    "GetoptLong",
    "ggforce",
    "ggnewscale",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "GlobalOptions",
    "globals",
    "glue",
    "gower",
    "gridExtra",
    "gtable",
    "hardhat",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "igraph",
    "ipred",
    "IRanges",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "lambda.r",
    "later",
    "lattice",
    "lava",
    "lazyeval",
    "leaps",
    "lifecycle",
    "limma",
    "listenv",
    "lme4",
    "lmtest",
    "locfit",
    "logging",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "MatrixModels",
    "matrixStats",
    "mbest",
    "memoise",
    "mgcv",
    "microbenchmark",
    "mime",
    "minqa",
    "ModelMetrics",
    "modelr",
    "modeltools",
    "multcomp",
    "multcompView",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "otel",
    "parallelly",
    "pbkrtest",
    "pheatmap",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "polyclip",
    "polynom",
    "pROC",
    "prodlim",
    "progressr",
    "promises",
    "proxy",
    "purrr",
    "quantreg",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "recipes",
    "reformulas",
    "reshape2",
    "Rhdf5lib",
    "rjson",
    "rlang",
    "rmarkdown",
    "rpart",
    "RProtoBufLib",
    "rstatix",
    "Rtsne",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sandwich",
    "sass",
    "scales",
    "scatterplot3d",
    "Seqinfo",
    "shape",
    "shiny",
    "shinyFeedback",
    "shinyjs",
    "shinyMatrix",
    "snow",
    "sourcetools",
    "SparseArray",
    "SparseM",
    "sparsevctrs",
    "SQUAREM",
    "statmod",
    "stringi",
    "stringr",
    "strucchange",
    "SummarizedExperiment",
    "survival",
    "systemfonts",
    "TH.data",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tinytex",
    "tweenr",
    "tzdb",
    "urca",
    "utf8",
    "uuid",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "xfun",
    "XML",
    "xtable",
    "XVector",
    "yaml",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "CyTOFpower.Rmd",
      "filename": "CyTOFpower.html",
      "title": "Power analysis for CyTOF experiments",
      "author": "Anne-Maud Ferreira",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Simulate in-silico data",
        "Power computation",
        "Shiny app",
        "Precomputed dataset",
        "Personalized dataset",
        "Run the app",
        "Session information",
        "References"
      ],
      "created": "2021-09-24 23:25:15",
      "modified": "2021-10-18 20:34:24",
      "commits": 4
    }
  ],
  "_score": 4.176091259055681,
  "_indexed": true,
  "_nocasepkg": "cytofpower",
  "_universes": [
    "bioc",
    "ferreiraam"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.19.1",
      "date": "2026-05-11T22:12:39.000Z",
      "distro": "noble",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "fe873ba98c76dfe30886fd39633251add308151cfd5947695c98e061856d8e07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.19.1",
      "date": "2026-05-11T22:13:23.000Z",
      "distro": "noble",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "e4ed2990b3dfa6558f1d469929548e1d3d4d2f1d2db6e8080314a7379990a172",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.19.1",
      "date": "2026-05-11T22:10:55.000Z",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "db2b8716c544e78192734841cb1a952bc645f5c6a7c1bff85d1822f362e80071",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.19.1",
      "date": "2026-05-11T22:11:08.000Z",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "cba1c07e2bc8bc5284c10bcd1566739a9b5f653654220656f524e1e75750db41",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.19.1",
      "date": "2026-05-11T22:12:58.000Z",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "391c3dd0c31a5b86dbc8d0c7ae36c302471bd34ca4a1d14d43ad32675d984246",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.19.1",
      "date": "2026-05-11T22:10:34.000Z",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "fd762ca66d55cbef9e8dc7ceada8902e78e424739d4c6dc8bc0d23ffa06d434a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.19.1",
      "date": "2026-05-11T22:10:29.000Z",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "568c7f689364faff9daee59043964ba8e6a672bce45b1ae09c4db685b65d6d90",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.19.1",
      "date": "2026-05-22T11:15:01.000Z",
      "commit": "b8a830642677d24e7beccf0a71e3b1f2f56c53ea",
      "fileid": "3b7485288a10b66c5a4ebfb4b798c29503f4f6621b9aa11a590d8c75a81ff9ea",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25700010496"
    }
  ]
}