Package: Cormotif 1.59.0

Yingying Wei

Cormotif: Correlation Motif Fit

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Authors:Hongkai Ji, Yingying Wei

Cormotif_1.59.0.tar.gz
Cormotif_1.59.0.zip(r-4.7)Cormotif_1.59.0.zip(r-4.6)Cormotif_1.59.0.zip(r-4.5)
Cormotif_1.59.0.tgz(r-4.6-any)Cormotif_1.59.0.tgz(r-4.5-any)
Cormotif_1.59.0.tar.gz(r-4.7-any)Cormotif_1.59.0.tar.gz(r-4.6-any)
Cormotif_1.59.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Cormotif/json (API)

# Install 'Cormotif' in R:
install.packages('Cormotif', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Cormotif-1.59.0(bioc 3.24)Cormotif-1.58.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpression

4.78 score 60 scripts 372 downloads 5 mentions 7 exports 9 dependencies

Last updated from:a29be76e0c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR142
linux-devel-x86_64NOTE143
source / vignettesOK206
linux-release-x86_64NOTE172
macos-release-arm64NOTE92
macos-oldrel-arm64NOTE116
windows-develNOTE101
windows-releaseNOTE88
windows-oldrelNOTE71
wasm-releaseOK93

Exports:cormotiffitcormotiffitallcormotiffitfullcormotiffitsepgenerankplotICplotMotif

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmod

Cormotif Vignette

Rendered fromCormotifVignette.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Correlation Motif Internal functionscmfit cmfitall cmfitfull cmfitsep generatetype limmafit modt.f0.loglike modt.f1.loglike
Correlation Motif Fitcormotiffit
All Studies Correlation Motif Fitcormotiffitall
Full Model Motif Fitcormotiffitfull
Individual Study Motif Fitcormotiffitsep
Rank genes based on statisticsgenerank
BIC and AIC plotplotIC
Correlation Motif plotplotMotif
Example dataset for Cormotifsimu2_compgroup simu2_groupid simudata2