Package: Cormotif 1.59.0
Yingying Wei
Cormotif: Correlation Motif Fit
It fits correlation motif model to multiple studies to detect study specific differential expression patterns.
Authors:
Cormotif_1.59.0.tar.gz
Cormotif_1.59.0.zip(r-4.7)Cormotif_1.59.0.zip(r-4.6)Cormotif_1.59.0.zip(r-4.5)
Cormotif_1.59.0.tgz(r-4.6-any)Cormotif_1.59.0.tgz(r-4.5-any)
Cormotif_1.59.0.tar.gz(r-4.7-any)Cormotif_1.59.0.tar.gz(r-4.6-any)
Cormotif_1.59.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Cormotif/json (API)
| # Install 'Cormotif' in R: |
| install.packages('Cormotif', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- simu2_compgroup - Example dataset for Cormotif
- simu2_groupid - Example dataset for Cormotif
- simudata2 - Example dataset for Cormotif
On BioConductor:Cormotif-1.59.0(bioc 3.24)Cormotif-1.58.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpression
Last updated from:a29be76e0c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 138 | ||
| linux-devel-x86_64 | NOTE | 140 | ||
| source / vignettes | OK | 209 | ||
| linux-release-x86_64 | NOTE | 155 | ||
| macos-release-arm64 | NOTE | 70 | ||
| macos-oldrel-arm64 | NOTE | 75 | ||
| windows-devel | NOTE | 76 | ||
| windows-release | NOTE | 75 | ||
| windows-oldrel | NOTE | 86 | ||
| wasm-release | OK | 102 |
Exports:cormotiffitcormotiffitallcormotiffitfullcormotiffitsepgenerankplotICplotMotif
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Correlation Motif Internal functions | cmfit cmfitall cmfitfull cmfitsep generatetype limmafit modt.f0.loglike modt.f1.loglike |
| Correlation Motif Fit | cormotiffit |
| All Studies Correlation Motif Fit | cormotiffitall |
| Full Model Motif Fit | cormotiffitfull |
| Individual Study Motif Fit | cormotiffitsep |
| Rank genes based on statistics | generank |
| BIC and AIC plot | plotIC |
| Correlation Motif plot | plotMotif |
| Example dataset for Cormotif | simu2_compgroup simu2_groupid simudata2 |