Package: Cormotif 1.53.0
Yingying Wei
Cormotif: Correlation Motif Fit
It fits correlation motif model to multiple studies to detect study specific differential expression patterns.
Authors:
Cormotif_1.53.0.tar.gz
Cormotif_1.53.0.zip(r-4.5)Cormotif_1.53.0.zip(r-4.4)Cormotif_1.53.0.zip(r-4.3)
Cormotif_1.53.0.tgz(r-4.4-any)Cormotif_1.53.0.tgz(r-4.3-any)
Cormotif_1.53.0.tar.gz(r-4.5-noble)Cormotif_1.53.0.tar.gz(r-4.4-noble)
Cormotif_1.53.0.tgz(r-4.4-emscripten)Cormotif_1.53.0.tgz(r-4.3-emscripten)
Cormotif.pdf |Cormotif.html✨
Cormotif/json (API)
| # Install 'Cormotif' in R: |
| install.packages('Cormotif', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- simu2_compgroup - Example dataset for Cormotif
- simu2_groupid - Example dataset for Cormotif
- simudata2 - Example dataset for Cormotif
On BioConductor:Cormotif-1.53.0(bioc 3.21)Cormotif-1.52.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpression
Last updated 2 months agofrom:1746b95e83. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 09 2024 |
| R-4.5-win | NOTE | Dec 09 2024 |
| R-4.5-linux | NOTE | Dec 09 2024 |
| R-4.4-win | NOTE | Dec 09 2024 |
| R-4.4-mac | NOTE | Dec 09 2024 |
| R-4.3-win | NOTE | Dec 09 2024 |
| R-4.3-mac | NOTE | Dec 09 2024 |
Exports:cormotiffitcormotiffitallcormotiffitfullcormotiffitsepgenerankplotICplotMotif
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmodzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Correlation Motif Internal functions | cmfit cmfitall cmfitfull cmfitsep generatetype limmafit modt.f0.loglike modt.f1.loglike |
| Correlation Motif Fit | cormotiffit |
| All Studies Correlation Motif Fit | cormotiffitall |
| Full Model Motif Fit | cormotiffitfull |
| Individual Study Motif Fit | cormotiffitsep |
| Rank genes based on statistics | generank |
| BIC and AIC plot | plotIC |
| Correlation Motif plot | plotMotif |
| Example dataset for Cormotif | simu2_compgroup simu2_groupid simudata2 |