Package: Cormotif 1.53.0

Yingying Wei

Cormotif: Correlation Motif Fit

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Authors:Hongkai Ji, Yingying Wei

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Cormotif.pdf |Cormotif.html✨
Cormotif/json (API)

# Install 'Cormotif' in R:
install.packages('Cormotif', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Cormotif-1.53.0(bioc 3.21)Cormotif-1.52.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpression

4.65 score 45 scripts 301 downloads 5 mentions 7 exports 9 dependencies

Last updated 5 months agofrom:1746b95e83. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 09 2025
R-4.5-winNOTEMar 09 2025
R-4.5-macNOTEMar 09 2025
R-4.5-linuxNOTEMar 09 2025
R-4.4-winNOTEMar 09 2025
R-4.4-macNOTEMar 09 2025
R-4.4-linuxNOTEMar 09 2025
R-4.3-winNOTEMar 09 2025
R-4.3-macNOTEMar 09 2025

Exports:cormotiffitcormotiffitallcormotiffitfullcormotiffitsepgenerankplotICplotMotif

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmod

Cormotif Vignette

Rendered fromCormotifVignette.Rnwusingutils::Sweaveon Mar 09 2025.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Correlation Motif Internal functionscmfit cmfitall cmfitfull cmfitsep generatetype limmafit modt.f0.loglike modt.f1.loglike
Correlation Motif Fitcormotiffit
All Studies Correlation Motif Fitcormotiffitall
Full Model Motif Fitcormotiffitfull
Individual Study Motif Fitcormotiffitsep
Rank genes based on statisticsgenerank
BIC and AIC plotplotIC
Correlation Motif plotplotMotif
Example dataset for Cormotifsimu2_compgroup simu2_groupid simudata2