Package: Cormotif 1.51.0

Yingying Wei

Cormotif: Correlation Motif Fit

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Authors:Hongkai Ji, Yingying Wei

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Cormotif.pdf |Cormotif.html✨
Cormotif/json (API)

# Install 'Cormotif' in R:
install.packages('Cormotif', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:Cormotif-1.51.0(bioc 3.20)Cormotif-1.50.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

7 exports 0.82 score 9 dependencies 5 mentions

Last updated 2 months agofrom:c4ec20c186

Exports:cormotiffitcormotiffitallcormotiffitfullcormotiffitsepgenerankplotICplotMotif

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerlimmapreprocessCorestatmodzlibbioc

Cormotif Vignette

Rendered fromCormotifVignette.Rnwusingutils::Sweaveon Jun 19 2024.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Correlation Motif Internal functionscmfit cmfitall cmfitfull cmfitsep generatetype limmafit modt.f0.loglike modt.f1.loglike
Correlation Motif Fitcormotiffit
All Studies Correlation Motif Fitcormotiffitall
Full Model Motif Fitcormotiffitfull
Individual Study Motif Fitcormotiffitsep
Rank genes based on statisticsgenerank
BIC and AIC plotplotIC
Correlation Motif plotplotMotif
Example dataset for Cormotifsimu2_compgroup simu2_groupid simudata2