Package: ComPrAn 1.13.0

Petra Palenikova

ComPrAn: Complexome Profiling Analysis package

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Authors:Rick Scavetta [aut], Petra Palenikova [aut, cre]

ComPrAn_1.13.0.tar.gz
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ComPrAn.pdf |ComPrAn.html✨
ComPrAn/json (API)
NEWS

# Install 'ComPrAn' in R:
install.packages('ComPrAn', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:ComPrAn-1.13.0(bioc 3.20)ComPrAn-1.12.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

19 exports 0.61 score 99 dependencies 1 mentions

Last updated 2 months agofrom:871e9f4994

Exports:allPeptidesPlotassignClusterscleanDataclusterCompcompranAppexportClusterAssignmentsgetNormTablegroupHeatMapmakeBarPlotClusterSummaryoneGroupTwoLabelsCoMigrationonlyInOneLabelStatepeptideImportpickPeptideproteinPlotprotImportForAnalysissimplifyProteinssplitModLabtoFiltertwoGroupsWithinLabelCoMigration

Dependencies:base64encbitbit64bslibcachemcellrangerclicliprcolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrDTevaluatefansifarverfastmapfontawesomeforcatsforeignformatRfsfutile.loggerfutile.optionsgenericsggplot2gluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigprettyunitsprogresspromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppreadrreadxlrematchriorlangrmarkdownsassscalesshinyshinydashboardshinyjssourcetoolsstringistringrtibbletidyrtidyselecttinytextzdbutf8vctrsVennDiagramviridisLitevroomwithrwritexlxfunxtableyaml

Input File Description

Petra Palenikova & Rick Scavetta

Rendered fromfileFormats.rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2020-12-23
Started: 2019-08-14

Protein workflow

Petra Palenikova & Rick Scavetta

Rendered fromproteinWorkflow.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2021-01-26
Started: 2019-08-14

SILAC complexomics

Petra Palenikova & Rick Scavetta

Rendered fromSILACcomplexomics.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2021-01-26
Started: 2019-08-13