Package: ComPrAn 1.15.0

Petra Palenikova

ComPrAn: Complexome Profiling Analysis package

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Authors:Rick Scavetta [aut], Petra Palenikova [aut, cre]

ComPrAn_1.15.0.tar.gz
ComPrAn_1.15.0.zip(r-4.5)ComPrAn_1.15.0.zip(r-4.4)ComPrAn_1.15.0.zip(r-4.3)
ComPrAn_1.15.0.tgz(r-4.4-any)ComPrAn_1.15.0.tgz(r-4.3-any)
ComPrAn_1.15.0.tar.gz(r-4.5-noble)ComPrAn_1.15.0.tar.gz(r-4.4-noble)
ComPrAn_1.15.0.tgz(r-4.4-emscripten)ComPrAn_1.15.0.tgz(r-4.3-emscripten)
ComPrAn.pdf |ComPrAn.html✨
ComPrAn/json (API)
NEWS

# Install 'ComPrAn' in R:
install.packages('ComPrAn', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:ComPrAn-1.15.0(bioc 3.21)ComPrAn-1.14.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

massspectrometryproteomicsvisualization

4.48 score 5 scripts 140 downloads 1 mentions 19 exports 99 dependencies

Last updated 2 months agofrom:30c8d3c5f4. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:allPeptidesPlotassignClusterscleanDataclusterCompcompranAppexportClusterAssignmentsgetNormTablegroupHeatMapmakeBarPlotClusterSummaryoneGroupTwoLabelsCoMigrationonlyInOneLabelStatepeptideImportpickPeptideproteinPlotprotImportForAnalysissimplifyProteinssplitModLabtoFiltertwoGroupsWithinLabelCoMigration

Dependencies:base64encbitbit64bslibcachemcellrangerclicliprcolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrDTevaluatefansifarverfastmapfontawesomeforcatsforeignformatRfsfutile.loggerfutile.optionsgenericsggplot2gluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigprettyunitsprogresspromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppreadrreadxlrematchriorlangrmarkdownsassscalesshinyshinydashboardshinyjssourcetoolsstringistringrtibbletidyrtidyselecttinytextzdbutf8vctrsVennDiagramviridisLitevroomwithrwritexlxfunxtableyaml

Input File Description

Petra Palenikova & Rick Scavetta

Rendered fromfileFormats.rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2020-12-23
Started: 2019-08-14

Protein workflow

Petra Palenikova & Rick Scavetta

Rendered fromproteinWorkflow.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2021-01-26
Started: 2019-08-14

SILAC complexomics

Petra Palenikova & Rick Scavetta

Rendered fromSILACcomplexomics.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2021-01-26
Started: 2019-08-13