Package: Cogito 1.13.0

Annika Bürger

Cogito: Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Biological studies often consist of multiple conditions which are examined with different laboratory set ups like RNA-sequencing or ChIP-sequencing. To get an overview about the whole resulting data set, Cogito provides an automated, complete, reproducible and clear report about all samples and basic comparisons between all different samples. This report can be used as documentation about the data set or as starting point for further custom analysis.

Authors:Annika Bürger [cre, aut]

Cogito_1.13.0.tar.gz
Cogito_1.13.0.zip(r-4.5)Cogito_1.13.0.zip(r-4.4)Cogito_1.13.0.zip(r-4.3)
Cogito_1.13.0.tgz(r-4.5-any)Cogito_1.13.0.tgz(r-4.4-any)Cogito_1.13.0.tgz(r-4.3-any)
Cogito_1.13.0.tar.gz(r-4.5-noble)Cogito_1.13.0.tar.gz(r-4.4-noble)
Cogito_1.13.0.tgz(r-4.4-emscripten)Cogito_1.13.0.tgz(r-4.3-emscripten)
Cogito.pdf |Cogito.html✨
Cogito/json (API)

# Install 'Cogito' in R:
install.packages('Cogito', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Cogito-1.13.0(bioc 3.21)Cogito-1.12.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsgeneregulationsoftwaresequencing

4.00 score 3 scripts 172 downloads 5 mentions 2 exports 105 dependencies

Last updated 4 months agofrom:55b1c5a6ed. Checks:2 OK, 6 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winERRORJan 28 2025
R-4.5-macERRORJan 28 2025
R-4.5-linuxOKJan 28 2025
R-4.4-winERRORJan 28 2025
R-4.4-macERRORJan 28 2025
R-4.3-winERRORJan 28 2025
R-4.3-macERRORJan 28 2025

Exports:aggregateRangessummarizeRanges

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArraydigestentropyevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhtmltoolshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngR6rappdirsRColorBrewerRCurlrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalessnowSparseArraySummarizedExperimentsystibbletinytexTxDb.Mmusculus.UCSC.mm9.knownGeneUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryaml

Cogito: Compare annotated genomic intervals tool

Annika Buerger

Rendered fromCogito.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2022-07-07
Started: 2021-08-12