Package: Cogito 1.13.0

Annika Bürger

Cogito: Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Biological studies often consist of multiple conditions which are examined with different laboratory set ups like RNA-sequencing or ChIP-sequencing. To get an overview about the whole resulting data set, Cogito provides an automated, complete, reproducible and clear report about all samples and basic comparisons between all different samples. This report can be used as documentation about the data set or as starting point for further custom analysis.

Authors:Annika Bürger [cre, aut]

Cogito_1.13.0.tar.gz
Cogito_1.13.0.zip(r-4.5)Cogito_1.13.0.zip(r-4.4)Cogito_1.13.0.zip(r-4.3)
Cogito_1.13.0.tgz(r-4.4-any)Cogito_1.13.0.tgz(r-4.3-any)
Cogito_1.13.0.tar.gz(r-4.5-noble)Cogito_1.13.0.tar.gz(r-4.4-noble)
Cogito_1.13.0.tgz(r-4.4-emscripten)Cogito_1.13.0.tgz(r-4.3-emscripten)
Cogito.pdf |Cogito.html✨
Cogito/json (API)

# Install 'Cogito' in R:
install.packages('Cogito', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:Cogito-1.13.0(bioc 3.21)Cogito-1.12.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsgeneregulationsoftwaresequencing

4.00 score 3 scripts 124 downloads 5 mentions 2 exports 106 dependencies

Last updated 2 months agofrom:55b1c5a6ed. Checks:OK: 2 ERROR: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winERRORNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winERRORNov 29 2024
R-4.4-macERRORNov 29 2024
R-4.3-winERRORNov 29 2024
R-4.3-macERRORNov 29 2024

Exports:aggregateRangessummarizeRanges

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArraydigestentropyevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhtmltoolshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngR6rappdirsRColorBrewerRCurlrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalessnowSparseArraySummarizedExperimentsystibbletinytexTxDb.Mmusculus.UCSC.mm9.knownGeneUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryamlzlibbioc

Cogito: Compare annotated genomic intervals tool

Annika Buerger

Rendered fromCogito.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2022-07-07
Started: 2021-08-12