Package: Cogito 1.19.0

Annika Bürger

Cogito: Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Biological studies often consist of multiple conditions which are examined with different laboratory set ups like RNA-sequencing or ChIP-sequencing. To get an overview about the whole resulting data set, Cogito provides an automated, complete, reproducible and clear report about all samples and basic comparisons between all different samples. This report can be used as documentation about the data set or as starting point for further custom analysis.

Authors:Annika Bürger [cre, aut]

Cogito_1.19.0.tar.gz
Cogito_1.19.0.zip(r-4.7)Cogito_1.19.0.zip(r-4.6)Cogito_1.19.0.zip(r-4.5)
Cogito_1.19.0.tgz(r-4.6-any)Cogito_1.19.0.tgz(r-4.5-any)
Cogito_1.19.0.tar.gz(r-4.7-any)Cogito_1.19.0.tar.gz(r-4.6-any)
Cogito_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Cogito/json (API)

# Install 'Cogito' in R:
install.packages('Cogito', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Cogito-1.19.0(bioc 3.24)Cogito-1.18.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsgeneregulationsoftwaresequencing

4.30 score 3 scripts 314 downloads 5 mentions 2 exports 96 dependencies

Last updated from:afc4838f5f. Checks:1 WARNING, 4 OK, 5 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING198
linux-devel-x86_64OK372
source / vignettesOK349
linux-release-x86_64OK431
macos-release-arm64ERROR314
macos-oldrel-arm64ERROR212
windows-develERROR310
windows-releaseERROR328
windows-oldrelERROR344
wasm-releaseOK177

Exports:aggregateRangessummarizeRanges

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydigestentropyevaluatefarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhtmltoolshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6rappdirsRColorBrewerRCurlrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySummarizedExperimentsystinytexTxDb.Mmusculus.UCSC.mm9.knownGenevctrsviridisLitewithrxfunXMLXVectoryaml

Cogito: Compare annotated genomic intervals tool

Annika Buerger

Rendered fromCogito.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-07-07
Started: 2021-08-12