Package: ClusterJudge 1.29.0

Adrian Pasculescu

ClusterJudge: Judging Quality of Clustering Methods using Mutual Information

ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

Authors:Adrian Pasculescu

ClusterJudge_1.29.0.tar.gz
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ClusterJudge_1.29.0.tgz(r-4.4-any)ClusterJudge_1.29.0.tgz(r-4.3-any)
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ClusterJudge.pdf |ClusterJudge.html
ClusterJudge/json (API)
NEWS

# Install 'ClusterJudge' in R:
install.packages('ClusterJudge', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Yeast.GO.assocs - Gene Ontology attributes associated to Yeast Gene entities
  • mi.GO.Yeast - Precalculated mutual information between Gene Ontology attributes of Yeast genes

On BioConductor:ClusterJudge-1.27.0(bioc 3.20)ClusterJudge-1.26.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarestatisticalmethodclusteringgeneexpressiongo

3.30 score 3 scripts 208 downloads 9 exports 19 dependencies

Last updated 23 days agofrom:e8c9f1db5a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:attribute_mut_infclusterJudgeclusterJudge_z_scoreconsolidate_entity_attributeconvert_Yeast_SGDId_2_systematicdownload_Yeast_GO_mappingdownload_Yeast_Go_termsentities_attribute_statsvalidate_association

Dependencies:askpasscurldeldirhttrinfotheointerpjpegjsonlitelatticelatticeExtraMASSmimeopensslpngR6RColorBrewerRcppRcppEigensys

ClusterJudge

Rendered fromClusterJudge-intro.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2019-04-17
Started: 2017-06-14