Package: CluMSID 1.21.0
CluMSID: Clustering of MS2 Spectra for Metabolite Identification
CluMSID is a tool that aids the identification of features in untargeted LC-MS/MS analysis by the use of MS2 spectra similarity and unsupervised statistical methods. It offers functions for a complete and customisable workflow from raw data to visualisations and is interfaceable with the xmcs family of preprocessing packages.
Authors:
CluMSID_1.21.0.tar.gz
CluMSID_1.21.0.zip(r-4.5)CluMSID_1.21.0.zip(r-4.4)CluMSID_1.21.0.zip(r-4.3)
CluMSID_1.21.0.tgz(r-4.4-any)CluMSID_1.21.0.tgz(r-4.3-any)
CluMSID_1.21.0.tar.gz(r-4.5-noble)CluMSID_1.21.0.tar.gz(r-4.4-noble)
CluMSID_1.21.0.tgz(r-4.4-emscripten)CluMSID_1.21.0.tgz(r-4.3-emscripten)
CluMSID.pdf |CluMSID.html✨
CluMSID/json (API)
NEWS
# Install 'CluMSID' in R: |
install.packages('CluMSID', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tdepke/clumsid/issues
On BioConductor:CluMSID-1.21.0(bioc 3.20)CluMSID-1.20.0(bioc 3.19)
Last updated 2 months agofrom:c4712fbfaa
Exports:accessAnnotationaccessIDaccessNeutralLossesaccessPolarityaccessPrecursoraccessRTaccessSpectrumaddAnnotationsas.MS2spectrumcossimdistanceMatrixextractMS2spectraextractPseudospectrafeatureListfindFragmentfindNLgetSimilaritiesgetSpectrumHCplotHCtblintensityMDSplotmergeMS2spectramznetworkplotOPTICSplotOPTICStblpeaksCountprecursorMzrtimeshowspecplotsplitPolaritieswriteFeaturelist
Dependencies:abindaffyaffyioAnnotationFilterapeaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiocParallelbitbit64bitopsbroombroom.helpersbslibcachemcaToolsclicliprclueclustercodacodetoolscolorspacecpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforcatsforeachformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGGallyggplot2ggstatsgluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglabelledlambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeMsCoreUtilsMSnbaseMultiAssayExperimentmunsellmzIDmzRncdf4networknlmeopensslpatchworkpcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchpurrrQFeaturesR6rappdirsRColorBrewerRcppreadrreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorssassscalessnasnowSparseArraystatmodstatnet.commonstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisLitevroomvsnwithrxfunXMLXVectoryamlzlibbioc
Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID
Rendered fromCluMSID_DI-MSMS.Rmd
usingknitr::rmarkdown
on Jul 04 2024.Last update: 2018-12-15
Started: 2018-11-12
Clustering Mass Spectra from Low Resolution GC-EI-MS Data Using CluMSID
Rendered fromCluMSID_GC-EI-MS.Rmd
usingknitr::rmarkdown
on Jul 04 2024.Last update: 2018-12-15
Started: 2018-11-11
Clustering Mass Spectra from Low Resolution LC-MS/MS Data Using CluMSID
Rendered fromCluMSID_lowres-LC-MSMS.Rmd
usingknitr::rmarkdown
on Jul 04 2024.Last update: 2018-12-15
Started: 2018-11-12
Using CluMSID with a Publicly Available MetaboLights Data Set
Rendered fromCluMSID_MTBLS.Rmd
usingknitr::rmarkdown
on Jul 04 2024.Last update: 2018-12-15
Started: 2018-11-12
CluMSID --- Clustering of MS^2^ Spectra for Metabolite Identification
Rendered fromCluMSID_tutorial.Rmd
usingknitr::rmarkdown
on Jul 04 2024.Last update: 2019-01-02
Started: 2018-04-19