NEWS

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CluMSID 1.3.1

• fixed bug in mergeMS2spectra when used with external peaktable

CluMSID 0.99.13

• changed download instructions to BiocManager::install()

CluMSID 0.99.12

• Bioconductor review II: R, part three
• added MS2spectrum methods for MSnbase/ProtGenerics generics
• minor code changes with no visible effect for users

CluMSID 0.99.11

• fixed bug in new distanceMatrix(), now coerces numeric IDs to character

CluMSID 0.99.10

• Bioconductor review II: R, part two
• replaced nested for-loop inside distanceMatrix()

CluMSID 0.99.9

• Bioconductor review II: R, part one
• provided all 'type' argument options as vector
• added '...' argument to specplot()
• changed function to convert MSnbase objects from 'convertSpectrum(x)' to 'as.MS2spectrum(x)' / 'as(x, "MS2spectrum")'
• various minor code changes with no visible effect for users

CluMSID 0.99.8

• Bioconductor review I: DESCRIPTION and NAMESPACE
• added URL and BugReports to DESCRIPTION
• started importing all packages into NAMESPACE
• abandoned "CluMSID_" prefix and renamed respective functions
• changed all function names to camel case starting with lower case letters

CluMSID 0.99.7

• further reduced size of vignettes

CluMSID 0.99.6

• bugfix in MTBLS vignette

CluMSID 0.99.5

• modified data import for CluMSID MTBLS vignette

CluMSID 0.99.4

• reduced size of vignettes

CluMSID 0.99.3

• added missing dependency for is()

CluMSID 0.99.2

• started avoiding class() function to check for class
• minor code style change

CluMSID 0.99.1

• removed .RHistory
• changed import for "show"
• removed invalid character from GC_post.csv in CluMSIDdata which caused errors on Linux and OS X

CluMSID 0.99.0

• Bioconductor submission

CluMSID 0.1.14

• deleted inst/extdata (now in CluMSIDdata)

CluMSID 0.1.13

• updated R version dependency to 3.6
• code style changes

CluMSID 0.1.12

• updated vignette dependencies

CluMSID 0.1.11

• added missing Suggests
• updated documentation and GC-EI-MS vignette

CluMSID 0.1.10

• added splitPolarities() function
• added specplot() function

CluMSID 0.1.9

• Featurelist() and writeFeaturelist() now also work with lists of 'pseudospectrum' objects
• bugfix for intensity extraction in extractPseudospectra()
• tutorial update

CluMSID 0.1.8

• added "..." to CluMSID_MDSplot(), CluMSID_HCplot(), CluMSID_OPTICSplot() to allow for customisation of plot appearance

CluMSID 0.1.7

• added polarity slot to 'MS2spectrum' class and respective show() generic
• added polarity accessor
• added extraction of polarity information from raw data to extractMS2spectra()

CluMSID 0.1.6

• added a NEWS file
• added "tolerance" argument for m/z tolerance to cossim() and distanceMatrix()
• added accessor functions for "MS2spectrum" and "pseudospectrum" objects
• added runnable examples for all exported functions
• some formatting and style changes