Package: Clomial 1.43.0

Habil Zare

Clomial: Infers clonal composition of a tumor

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

Authors:Habil Zare and Alex Hu

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NEWS

# Install 'Clomial' in R:
install.packages('Clomial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:Clomial-1.41.0(bioc 3.20)Clomial-1.40.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneticvariabilitysequencingclusteringmultiplecomparisonbayesiandnaseqexomeseqtargetedresequencingimmunooncology

3.30 score 3 scripts 178 downloads 7 exports 2 dependencies

Last updated 23 days agofrom:ed32b0fda4. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macNOTEOct 30 2024

Exports:choose.bestClomialClomial.generate.dataClomial.iterateClomial.likelihoodcompute.biccompute.errors

Dependencies:matrixStatspermute

A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples

Rendered fromClonal_decomposition_by_Clomial.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2021-02-10
Started: 2014-03-10