Package: Clomial 1.43.0

Habil Zare

Clomial: Infers clonal composition of a tumor

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

Authors:Habil Zare and Alex Hu

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Clomial/json (API)
NEWS

# Install 'Clomial' in R:
install.packages('Clomial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Clomial-1.43.0(bioc 3.21)Clomial-1.42.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneticvariabilitysequencingclusteringmultiplecomparisonbayesiandnaseqexomeseqtargetedresequencingimmunooncology

4.30 score 3 scripts 238 downloads 10 mentions 7 exports 2 dependencies

Last updated 5 months agofrom:ed32b0fda4. Checks:1 OK, 8 NOTE. Indexed: yes.

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Exports:choose.bestClomialClomial.generate.dataClomial.iterateClomial.likelihoodcompute.biccompute.errors

Dependencies:matrixStatspermute

A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples

Rendered fromClonal_decomposition_by_Clomial.Rnwusingutils::Sweaveon Mar 23 2025.

Last update: 2021-02-10
Started: 2014-03-10