Package: Clomial 1.43.0

Habil Zare

Clomial: Infers clonal composition of a tumor

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

Authors:Habil Zare and Alex Hu

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NEWS

# Install 'Clomial' in R:
install.packages('Clomial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:Clomial-1.43.0(bioc 3.21)Clomial-1.42.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneticvariabilitysequencingclusteringmultiplecomparisonbayesiandnaseqexomeseqtargetedresequencingimmunooncology

4.30 score 3 scripts 188 downloads 10 mentions 7 exports 2 dependencies

Last updated 2 months agofrom:ed32b0fda4. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 23 2024
R-4.5-winNOTENov 23 2024
R-4.5-linuxNOTENov 23 2024
R-4.4-winNOTENov 23 2024
R-4.4-macNOTENov 23 2024
R-4.3-winNOTENov 23 2024
R-4.3-macNOTENov 23 2024

Exports:choose.bestClomialClomial.generate.dataClomial.iterateClomial.likelihoodcompute.biccompute.errors

Dependencies:matrixStatspermute

A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples

Rendered fromClonal_decomposition_by_Clomial.Rnwusingutils::Sweaveon Nov 23 2024.

Last update: 2021-02-10
Started: 2014-03-10