Package: Clomial 1.49.0

Habil Zare

Clomial: Infers clonal composition of a tumor

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

Authors:Habil Zare and Alex Hu

Clomial_1.49.0.tar.gz
Clomial_1.49.0.zip(r-4.7)Clomial_1.49.0.zip(r-4.6)Clomial_1.49.0.zip(r-4.5)
Clomial_1.49.0.tgz(r-4.6-any)Clomial_1.49.0.tgz(r-4.5-any)
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Clomial_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Clomial/json (API)
NEWS

# Install 'Clomial' in R:
install.packages('Clomial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Clomial-1.49.0(bioc 3.24)Clomial-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneticvariabilitysequencingclusteringmultiplecomparisonbayesiandnaseqexomeseqtargetedresequencingimmunooncology

4.30 score 8 scripts 396 downloads 10 mentions 7 exports 2 dependencies

Last updated from:ca3ec4d09c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR127
linux-devel-x86_64NOTE221
source / vignettesOK158
linux-release-x86_64NOTE179
macos-release-arm64NOTE95
macos-oldrel-arm64NOTE99
windows-develNOTE213
windows-releaseNOTE189
windows-oldrelNOTE152
wasm-releaseOK89

Exports:choose.bestClomialClomial.generate.dataClomial.iterateClomial.likelihoodcompute.biccompute.errors

Dependencies:matrixStatspermute

A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples

Rendered fromClonal_decomposition_by_Clomial.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2021-02-10
Started: 2014-03-10