To cite package 'Clomial' in publications use:

  Zare, H, et al.(2014) Inferring clonal composition from multiple
  sections of a breast cancer, Zare et al., PLoS Comput Biol 10(7):
  e1003703.URL: http://noble.gs.washington.edu/~zare/.

A BibTeX entry for LaTeX users is

  @Article{,
    author = {{Zare} and {H} and et al.},
    title = {{Inferring clonal composition from multiple sections of a breast cancer}},
    journal = {PLOS Computational Biology},
    year = {2014},
    volume = {10},
    number = {7},
    pages = {e1003703},
    month = {July},
  }