Package: CexoR 1.43.0
Pedro Madrigal
CexoR: An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.
Authors:
CexoR_1.43.0.tar.gz
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CexoR.pdf |CexoR.html✨
CexoR/json (API)
| # Install 'CexoR' in R: |
| install.packages('CexoR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:CexoR-1.43.0(bioc 3.20)CexoR-1.42.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:16301bb781
Exports:cexorplotcexorpskellampskellam.sp
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomeclicliprcodetoolscolorspacecpp11crayoncurldata.tableDelayedArrayfansifarverformatRfutile.loggerfutile.optionsgenomationGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegridBasegtablehmshttridrimputeIRangesisobandjsonliteKernSmoothlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigplotrixplyrprettyunitsprogressR6RColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalesseqPatternsnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLXVectoryamlzlibbioc
